Ticket #686: r4843_c.txt

File r4843_c.txt, 89.8 KB (added by Timothy S. Sliwinski, 5 months ago)

Added by email2trac

Line 
1Configuring MPICH2 version 1.1.1 with  '-prefix=/home/tim/mpich2-test'
2Running on system: FreeBSD beowulf.ghettonet.homeunix.net 7.2-RELEASE FreeBSD 7.2-RELEASE #0: Fri May  1 08:49:13 UTC 2009     root@walker.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC  i386
3Executing mpich2prereq in /home/tim/libraries/mpich2-trunk-r4843/src/mpid/ch3 with
4Executing mpich2prereq in /home/tim/libraries/mpich2-trunk-r4843/src/mpid/ch3/channels/nemesis
5sourcing /home/tim/libraries/mpich2-trunk-r4843/src/pm/mpd/mpich2prereq
6sourcing /home/tim/libraries/mpich2-trunk-r4843/src/pm/hydra/mpich2prereq
7sourcing /home/tim/libraries/mpich2-trunk-r4843/src/pm/gforker/mpich2prereq
8sourcing /home/tim/libraries/mpich2-trunk-r4843/src/pm/mpd/setup_pm
9checking for gcc... gcc
10checking for C compiler default output file name... a.out
11checking whether the C compiler works... yes
12checking whether we are cross compiling... no
13checking for suffix of executables...
14checking for suffix of object files... o
15checking whether we are using the GNU C compiler... yes
16checking whether gcc accepts -g... yes
17checking for gcc option to accept ISO C89... none needed
18checking how to run the C preprocessor... gcc -E
19checking whether the compiler defines __func__... yes
20checking whether the compiler defines __FUNC__... no
21checking whether the compiler sets __FUNCTION__... yes
22checking whether C compiler accepts option -O2... yes
23checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
24checking for type of weak symbol alias support... pragma weak
25checking whether __attribute__ ((weak)) allowed... yes
26checking whether __attribute ((weak_import)) allowed... yes
27checking for multiple weak symbol support... yes
28checking for g77... no
29checking for xlf... no
30checking for f77... no
31checking for frt... no
32checking for pgf77... no
33checking for cf77... no
34checking for fort77... no
35checking for fl32... no
36checking for af77... no
37checking for xlf90... no
38checking for f90... no
39checking for pgf90... no
40checking for pghpf... no
41checking for epcf90... no
42checking for gfortran... no
43checking for g95... no
44checking for xlf95... no
45checking for f95... no
46checking for fort... no
47checking for ifort... no
48checking for ifc... no
49checking for efc... no
50checking for pgf95... no
51checking for lf95... no
52checking for ftn... no
53checking whether we are using the GNU Fortran 77 compiler... no
54checking whether  accepts -g... no
55checking for c++... c++
56checking whether we are using the GNU C++ compiler... yes
57checking whether c++ accepts -g... yes
58checking whether the C++ compiler c++ can build an executable... yes
59checking whether C++ compiler works with string... yes
60checking whether the compiler supports exceptions... yes
61checking whether the compiler recognizes bool as a built-in type... yes
62checking whether the compiler implements namespaces... yes
63checking whether <iostream> available... yes
64checking whether the compiler implements the namespace std... yes
65checking whether <math> available... no
66checking for GNU g++ version... 4 . 2
67checking whether C++ compiler accepts option -O2... yes
68checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
69checking for perl... no
70checking for ar... ar
71checking for ranlib... ranlib
72checking for etags... no
73checking for killall... killall
74checking for a BSD-compatible install... /usr/bin/install -c
75checking whether install works... yes
76checking whether install breaks libraries... no
77checking whether mkdir -p works... yes
78checking for make... make
79checking whether clock skew breaks make... no
80checking whether make supports include... yes
81checking whether make allows comments in actions... yes
82checking for virtual path format... VPATH
83checking whether make sets CFLAGS... yes
84checking for bash... no
85checking for doctext... false
86checking for location of doctext style files... doctext: not found
87unavailable
88checking for an ANSI C-conforming const... yes
89checking for volatile... yes
90checking for restrict... __restrict
91checking for inline... inline
92checking whether __attribute__ allowed... yes
93checking whether __attribute__((format)) allowed... yes
94checking whether byte ordering is bigendian... no
95checking whether C compiler allows unaligned doubles... yes
96checking whether gcc supports __func__... yes
97Using gcc to determine dependencies
98checking whether long double is supported... yes
99checking whether long long is supported... yes
100checking for max C struct integer alignment... four
101checking for max C struct floating point alignment... four
102checking for max C struct alignment of structs with doubles... four
103checking for max C struct floating point alignment with long doubles... four
104checking if alignment of structs with doubles is based on position... no
105checking if alignment of structs with long long ints is based on position... no
106checking if double alignment breaks rules, find actual alignment... no
107checking for alignment restrictions on pointers... int or better
108checking size of char... 1
109checking size of unsigned char... 1
110checking size of short... 2
111checking size of unsigned short... 2
112checking size of int... 4
113checking size of unsigned int... 4
114checking size of long... 4
115checking size of unsigned long... 4
116checking size of long long... 8
117checking size of unsigned long long... 8
118checking size of float... 4
119checking size of double... 8
120checking size of long double... 12
121checking size of wchar_t... 0
122checking stddef.h usability... yes
123checking stddef.h presence... yes
124checking for stddef.h... yes
125checking for sizeof wchar_t... 4
126checking size of void *... 4
127checking for size of float int... 8
128checking for size of double int... 12
129checking for size of long int... 8
130checking for size of short int... 6
131checking for size of 2 int... 8
132checking for size of long double int... 16
133checking sys/bitypes.h usability... no
134checking sys/bitypes.h presence... no
135checking for sys/bitypes.h... no
136checking inttypes.h usability... yes
137checking inttypes.h presence... yes
138checking for inttypes.h... yes
139checking stdint.h usability... yes
140checking stdint.h presence... yes
141checking for stdint.h... yes
142checking for int8_t... yes
143checking for int16_t... yes
144checking for int32_t... yes
145checking for int64_t... yes
146checking for uint8_t... yes
147checking for uint16_t... yes
148checking for uint32_t... yes
149checking for uint64_t... yes
150checking size of bool... 1
151checking how to run the C++ preprocessor... c++ -E
152checking complex usability... yes
153checking complex presence... yes
154checking for complex... yes
155checking size of Complex... 8
156checking size of DoubleComplex... 16
157checking size of LongDoubleComplex... 24
158checking if char * pointers use byte addresses... yes
159checking for alignment restrictions on ... no
160checking for alignment restrictions on int32_t... no
161checking size of MPIR_Bsend_data_t... 56
162checking for gcc __asm__ and pentium cmpxchgl instruction... yes
163checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no
164checking for gcc __asm__ and IA64 xchg4 instruction... no
165checking for ANSI C header files... memchr: not found
166no
167checking stdlib.h usability... yes
168checking stdlib.h presence... yes
169checking for stdlib.h... yes
170checking stdarg.h usability... yes
171checking stdarg.h presence... yes
172checking for stdarg.h... yes
173checking sys/types.h usability... yes
174checking sys/types.h presence... yes
175checking for sys/types.h... yes
176checking string.h usability... yes
177checking string.h presence... yes
178checking for string.h... yes
179checking for inttypes.h... (cached) yes
180checking limits.h usability... yes
181checking limits.h presence... yes
182checking for limits.h... yes
183checking for stddef.h... (cached) yes
184checking errno.h usability... yes
185checking errno.h presence... yes
186checking for errno.h... yes
187checking sys/socket.h usability... yes
188checking sys/socket.h presence... yes
189checking for sys/socket.h... yes
190checking sys/time.h usability... yes
191checking sys/time.h presence... yes
192checking for sys/time.h... yes
193checking unistd.h usability... yes
194checking unistd.h presence... yes
195checking for unistd.h... yes
196checking endian.h usability... no
197checking endian.h presence... no
198checking for endian.h... no
199checking assert.h usability... yes
200checking assert.h presence... yes
201checking for assert.h... yes
202checking sys/param.h usability... yes
203checking sys/param.h presence... yes
204checking for sys/param.h... yes
205checking for sys/uio.h... yes
206checking for size_t... yes
207checking for setitimer... yes
208checking for alarm... yes
209checking for vsnprintf... yes
210checking for vsprintf... yes
211checking whether vsnprintf needs a declaration... no
212checking for strerror... yes
213checking for strncasecmp... yes
214checking for snprintf... yes
215checking whether snprintf needs a declaration... no
216checking for va_copy... yes
217checking valgrind.h usability... no
218checking valgrind.h presence... no
219checking for valgrind.h... no
220checking memcheck.h usability... no
221checking memcheck.h presence... no
222checking for memcheck.h... no
223checking valgrind/valgrind.h usability... no
224checking valgrind/valgrind.h presence... no
225checking for valgrind/valgrind.h... no
226checking valgrind/memcheck.h usability... no
227checking valgrind/memcheck.h presence... no
228checking for valgrind/memcheck.h... no
229checking for working alloca.h... no
230checking for alloca... yes
231checking for strdup... yes
232checking whether strdup needs a declaration... no
233checking for mkstemp... yes
234checking whether mkstemp needs a declaration... no
235checking for fdopen... yes
236checking whether fdopen needs a declaration... yes
237checking for putenv... yes
238checking whether putenv needs a declaration... no
239checking for clock_gettime... yes
240checking for clock_getres... yes
241checking for gethrtime... no
242checking for gettimeofday... yes
243checking for clock_gettime... (cached) yes
244checking for clock_getres... (cached) yes
245checking whether struct timespec is defined in time.h... yes
246checking for CLOCK_REALTIME defined in time.h... yes
247sourcing /home/tim/libraries/mpich2-trunk-r4843/src/mpid/ch3/setup_device
248RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
249sourcing /home/tim/libraries/mpich2-trunk-r4843/src/mpid/ch3/channels/nemesis/setup_channel
250RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL
251sourcing /home/tim/libraries/mpich2-trunk-r4843/src/mpid/common/locks/setup
252RUNNING SETUP FOR THE PROCESS LOCKS MODULE
253SPARC V9 inline spin locks supported...no
254SPARC V8 inline spin locks supported...no
255checking pthread.h usability... yes
256checking pthread.h presence... yes
257checking for pthread.h... yes
258checking for pthread_yield... no
259checking for library containing pthread_key_create... none required
260checking whether pthread routines without explicit lib are broken... no
261checking for pthread_cleanup_push... yes
262checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... no
263checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes
264checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no
265checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes
266checking for sched_yield... yes
267checking for yield... no
268checking for usleep... yes
269checking for sleep... yes
270checking for select... yes
271checking for getpid... yes
272checking for sched_setaffinity... no
273checking for sched_getaffinity... no
274checking for bindprocessor... no
275checking for thread_policy_set... no
276configure: configuring subsystem in src/openpa
277checking for a BSD-compatible install... /usr/bin/install -c
278checking whether build environment is sane... yes
279checking for a thread-safe mkdir -p... mkdir -p
280checking for gawk... no
281checking for mawk... no
282checking for nawk... nawk
283checking whether make sets $(MAKE)... yes
284checking for gcc... gcc
285checking for C compiler default output file name... a.out
286checking whether the C compiler works... yes
287checking whether we are cross compiling... no
288checking for suffix of executables...
289checking for suffix of object files... o
290checking whether we are using the GNU C compiler... yes
291checking whether gcc accepts -g... yes
292checking for gcc option to accept ISO C89... none needed
293checking for style of include used by make... GNU
294checking dependency style of gcc... gcc3
295checking for ranlib... ranlib
296checking whether to enable assertions... yes
297checking how to run the C preprocessor... gcc -E
298checking for grep that handles long lines and -e... /usr/bin/grep
299checking for egrep... /usr/bin/grep -E
300checking for ANSI C header files... yes
301checking for sys/types.h... yes
302checking for sys/stat.h... yes
303checking for stdlib.h... yes
304checking for string.h... yes
305checking for memory.h... yes
306checking for strings.h... yes
307checking for inttypes.h... yes
308checking for stdint.h... yes
309checking for unistd.h... yes
310checking pthread.h usability... yes
311checking pthread.h presence... yes
312checking for pthread.h... yes
313checking atomic.h usability... no
314checking atomic.h presence... no
315checking for atomic.h... no
316checking intrin.h usability... no
317checking intrin.h presence... no
318checking for intrin.h... no
319checking for inttypes.h... (cached) yes
320checking for stdint.h... (cached) yes
321checking for C/C++ restrict keyword... __restrict
322checking for inline... inline
323checking for pthread_create in -lpthread... yes
324checking if 100 threads can be run at once... yes
325checking size of void *... 4
326checking size of int... 4
327checking whether __attribute__ allowed... yes
328checking whether __attribute__((format)) allowed... yes
329checking if compiler rejects bogus asm statements... yes
330checking for support for gcc x86/x86_64 bit primitives... yes
331checking for support for gcc ia64 primitives... no
332checking for support for gcc PowerPC atomics... no
333checking for support for gcc SiCortex atomics... no
334checking for support for gcc atomic intrinsics... no
335checking for support for Windows NT atomic intrinsics... no
336checking for support for Sun atomic operations library... no
337configure: creating ./config.status
338config.status: creating Makefile
339config.status: creating src/Makefile
340config.status: creating test/Makefile
341config.status: creating src/config.h
342config.status: executing src/opa_config.h commands
343config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
344config.status: executing depfiles commands
345configure: configuring subsystem in src/mpid/ch3
346RUNNING CONFIGURE FOR CH3 DEVICE
347checking for make... make
348checking whether clock skew breaks make... no
349checking whether make supports include... yes
350checking whether make allows comments in actions... yes
351checking for virtual path format... VPATH
352checking whether make sets CFLAGS... yes
35316
354checking for gcc... gcc
355checking for C compiler default output file name... a.out
356checking whether the C compiler works... yes
357checking whether we are cross compiling... no
358checking for suffix of executables...
359checking for suffix of object files... o
360checking whether we are using the GNU C compiler... yes
361checking whether gcc accepts -g... yes
362checking for gcc option to accept ISO C89... none needed
363checking how to run the C preprocessor... gcc -E
364checking for grep that handles long lines and -e... /usr/bin/grep
365checking for egrep... /usr/bin/grep -E
366checking for ANSI C header files... yes
367checking for sys/types.h... yes
368checking for sys/stat.h... yes
369checking for stdlib.h... yes
370checking for string.h... yes
371checking for memory.h... yes
372checking for strings.h... yes
373checking for inttypes.h... yes
374checking for stdint.h... yes
375checking for unistd.h... yes
376checking assert.h usability... yes
377checking assert.h presence... yes
378checking for assert.h... yes
379checking limits.h usability... yes
380checking limits.h presence... yes
381checking for limits.h... yes
382checking for string.h... (cached) yes
383checking for sys/types.h... (cached) yes
384checking sys/uio.h usability... yes
385checking sys/uio.h presence... yes
386checking for sys/uio.h... yes
387checking uuid/uuid.h usability... no
388checking uuid/uuid.h presence... no
389checking for uuid/uuid.h... no
390checking time.h usability... yes
391checking time.h presence... yes
392checking for time.h... yes
393checking ctype.h usability... yes
394checking ctype.h presence... yes
395checking for ctype.h... yes
396checking for unistd.h... (cached) yes
397checking arpa/inet.h usability... yes
398checking arpa/inet.h presence... yes
399checking for arpa/inet.h... yes
400checking sys/socket.h usability... yes
401checking sys/socket.h presence... yes
402checking for sys/socket.h... yes
403checking net/if.h usability... no
404checking net/if.h presence... yes
405configure: WARNING: net/if.h: present but cannot be compiled
406configure: WARNING: net/if.h:     check for missing prerequisite headers?
407configure: WARNING: net/if.h: see the Autoconf documentation
408configure: WARNING: net/if.h:     section "Present But Cannot Be Compiled"
409configure: WARNING: net/if.h: proceeding with the preprocessor's result
410configure: WARNING: net/if.h: in the future, the compiler will take precedence
411checking for net/if.h... yes
412checking for pid_t... yes
413checking for inet_pton... yes
414checking for gethostname... yes
415checking whether gethostname needs a declaration... no
416checking for CFUUIDCreate... no
417checking for uuid_generate... no
418checking for time... yes
419checking for library containing uuid_generate... no
420checking whether CPP accepts variable length argument lists... yes
421checking whether byte ordering is bigendian... no
422checking whether we can use struct ifconf... yes
423checking size of int... 4
424checking size of long... 4
425checking size of long long... 8
426checking size of void *... 4
427checking for etags... true
428configure: creating ./config.status
429config.status: creating Makefile
430config.status: creating src/Makefile
431config.status: creating util/Makefile
432config.status: creating util/shm/Makefile
433config.status: creating util/shmbase/Makefile
434config.status: creating channels/Makefile
435config.status: creating localdefs
436config.status: creating include/mpid_thread.h
437config.status: creating include/mpidi_ch3_conf.h
438config.status: executing default-1 commands
439copying /home/tim/libraries/mpich2-trunk-r4843/src/mpid/ch3/../common/thread/mpid_thread_mpe.c to src/mpid_thread.c
440=== configuring in channels/nemesis (/tmp/tim/mpich2test/src/mpid/ch3/channels/nemesis)
441configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/mpid/ch3/channels/nemesis/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpid/ch3/channels/nemesis
442RUNNING CONFIGURE FOR THE NEMESIS CHANNEL
443checking for make... make
444checking whether clock skew breaks make... no
445checking whether make supports include... yes
446checking whether make allows comments in actions... yes
447checking for virtual path format... VPATH
448checking whether make sets CFLAGS... yes
449checking for gcc... gcc
450checking for C compiler default output file name... a.out
451checking whether the C compiler works... yes
452checking whether we are cross compiling... no
453checking for suffix of executables...
454checking for suffix of object files... o
455checking whether we are using the GNU C compiler... yes
456checking whether gcc accepts -g... yes
457checking for gcc option to accept ISO C89... none needed
458checking for inline... inline
459checking how to run the C preprocessor... gcc -E
460checking for grep that handles long lines and -e... /usr/bin/grep
461checking for egrep... /usr/bin/grep -E
462checking for ANSI C header files... yes
463checking for sys/types.h... yes
464checking for sys/stat.h... yes
465checking for stdlib.h... yes
466checking for string.h... yes
467checking for memory.h... yes
468checking for strings.h... yes
469checking for inttypes.h... yes
470checking for stdint.h... yes
471checking for unistd.h... yes
472checking for pid_t... yes
473checking for net/if.h... yes
474checking assert.h usability... yes
475checking assert.h presence... yes
476checking for assert.h... yes
477checking netdb.h usability... yes
478checking netdb.h presence... yes
479checking for netdb.h... yes
480checking for unistd.h... (cached) yes
481checking sched.h usability... yes
482checking sched.h presence... yes
483checking for sched.h... yes
484checking sys/mman.h usability... yes
485checking sys/mman.h presence... yes
486checking for sys/mman.h... yes
487checking sys/ioctl.h usability... yes
488checking sys/ioctl.h presence... yes
489checking for sys/ioctl.h... yes
490checking sys/socket.h usability... yes
491checking sys/socket.h presence... yes
492checking for sys/socket.h... yes
493checking sys/sockio.h usability... yes
494checking sys/sockio.h presence... yes
495checking for sys/sockio.h... yes
496checking for sys/types.h... (cached) yes
497checking errno.h usability... yes
498checking errno.h presence... yes
499checking for errno.h... yes
500checking sys/ipc.h usability... yes
501checking sys/ipc.h presence... yes
502checking for sys/ipc.h... yes
503checking sys/shm.h usability... yes
504checking sys/shm.h presence... yes
505checking for sys/shm.h... yes
506checking for netinet/in.h... yes
507test: tcp: unexpected operator
508test: tcp: unexpected operator
509checking for mkstemp... yes
510checking for rand... yes
511checking for srand... yes
512checking for OpenPA atomic primitive availability... yes
513checking for mmap... yes
514checking for munmap... yes
515configure: Using a memory-mapped file for shared memory
516checking whether struct hostent contains h_addr_list... yes
517checking whether we can use struct ifconf... yes
518checking knem_io.h usability... no
519checking knem_io.h presence... no
520checking for knem_io.h... no
521configure: creating ./config.status
522config.status: creating Makefile
523config.status: creating src/Makefile
524config.status: creating nemesis/Makefile
525config.status: creating nemesis/src/Makefile
526config.status: creating nemesis/utils/Makefile
527config.status: creating nemesis/utils/replacements/Makefile
528config.status: creating nemesis/utils/monitor/Makefile
529config.status: creating nemesis/netmod/Makefile
530config.status: creating nemesis/netmod/elan/Makefile
531config.status: creating nemesis/netmod/gm/Makefile
532config.status: creating nemesis/netmod/mx/Makefile
533config.status: creating nemesis/netmod/tcp/Makefile
534config.status: creating nemesis/netmod/ib/Makefile
535config.status: creating nemesis/netmod/psm/Makefile
536config.status: creating nemesis/netmod/newmad/Makefile
537config.status: creating nemesis/netmod/none/Makefile
538config.status: creating localdefs
539config.status: creating nemesis/include/mpid_nem_net_module_defs.h
540config.status: creating nemesis/src/mpid_nem_net_array.c
541config.status: creating include/mpidi_ch3i_nemesis_conf.h
542configure: configuring subsystem in src/mpid/common/locks
543configure: WARNING: Unrecognized options: --with-atomic-primitives
544RUNNING CONFIGURE FOR LOCKS
545checking for make... make
546checking whether clock skew breaks make... no
547checking whether make supports include... yes
548checking whether make allows comments in actions... yes
549checking for virtual path format... VPATH
550checking whether make sets CFLAGS... yes
551checking for ar... ar
552checking for ranlib... ranlib
553checking for gcc... gcc
554checking for C compiler default output file name... a.out
555checking whether the C compiler works... yes
556checking whether we are cross compiling... no
557checking for suffix of executables...
558checking for suffix of object files... o
559checking whether we are using the GNU C compiler... yes
560checking whether gcc accepts -g... yes
561checking for gcc option to accept ISO C89... none needed
562checking for yield... no
563checking for sched_yield... yes
564checking for usleep... yes
565checking for sleep... yes
566checking for select... yes
567checking for mutex_init... no
568checking for compare_and_swap... no
569checking for pthread_mutexattr_init... yes
570checking for pthread_mutexattr_setpshared... no
571checking how to run the C preprocessor... gcc -E
572checking for grep that handles long lines and -e... /usr/bin/grep
573checking for egrep... /usr/bin/grep -E
574checking for ANSI C header files... yes
575checking for sys/types.h... yes
576checking for sys/stat.h... yes
577checking for stdlib.h... yes
578checking for string.h... yes
579checking for memory.h... yes
580checking for strings.h... yes
581checking for inttypes.h... yes
582checking for stdint.h... yes
583checking for unistd.h... yes
584checking pthread.h usability... yes
585checking pthread.h presence... yes
586checking for pthread.h... yes
587checking sched.h usability... yes
588checking sched.h presence... yes
589checking for sched.h... yes
590checking for inline... inline
591checking for working volatile... yes
592checking for an ANSI C-conforming const... yes
593configure: creating ./config.status
594config.status: creating Makefile
595config.status: creating mpid_locksconf.h
596configure: WARNING: Unrecognized options: --with-atomic-primitives
597configure: configuring subsystem in src/mpid/common/locks
598configure: WARNING: Unrecognized options: --with-atomic-primitives
599RUNNING CONFIGURE FOR LOCKS
600checking for make... make
601checking whether clock skew breaks make... no
602checking whether make supports include... yes
603checking whether make allows comments in actions... yes
604checking for virtual path format... VPATH
605checking whether make sets CFLAGS... yes
606checking for ar... ar
607checking for ranlib... ranlib
608checking for gcc... gcc
609checking for C compiler default output file name... a.out
610checking whether the C compiler works... yes
611checking whether we are cross compiling... no
612checking for suffix of executables...
613checking for suffix of object files... o
614checking whether we are using the GNU C compiler... yes
615checking whether gcc accepts -g... yes
616checking for gcc option to accept ISO C89... none needed
617checking for yield... no
618checking for sched_yield... yes
619checking for usleep... yes
620checking for sleep... yes
621checking for select... yes
622checking for mutex_init... no
623checking for compare_and_swap... no
624checking for pthread_mutexattr_init... yes
625checking for pthread_mutexattr_setpshared... no
626checking how to run the C preprocessor... gcc -E
627checking for grep that handles long lines and -e... /usr/bin/grep
628checking for egrep... /usr/bin/grep -E
629checking for ANSI C header files... yes
630checking for sys/types.h... yes
631checking for sys/stat.h... yes
632checking for stdlib.h... yes
633checking for string.h... yes
634checking for memory.h... yes
635checking for strings.h... yes
636checking for inttypes.h... yes
637checking for stdint.h... yes
638checking for unistd.h... yes
639checking pthread.h usability... yes
640checking pthread.h presence... yes
641checking for pthread.h... yes
642checking sched.h usability... yes
643checking sched.h presence... yes
644checking for sched.h... yes
645checking for inline... inline
646checking for working volatile... yes
647checking for an ANSI C-conforming const... yes
648configure: creating ./config.status
649config.status: creating Makefile
650config.status: creating mpid_locksconf.h
651config.status: mpid_locksconf.h is unchanged
652configure: WARNING: Unrecognized options: --with-atomic-primitives
653configure: configuring subsystem in src/mpi/romio
654configure: WARNING: Unrecognized options: --with-atomic-primitives
655Configuring with args --prefix=/home/tim/mpich2-test --with-atomic-primitives=auto_allow_emulation
656checking for architecture... freebsd
657ROMIO home directory is /home/tim/libraries/mpich2-trunk-r4843/src/mpi/romio
658checking for gcc... gcc
659checking for C compiler default output file name... a.out
660checking whether the C compiler works... yes
661checking whether we are cross compiling... no
662checking for suffix of executables...
663checking for suffix of object files... o
664checking whether we are using the GNU C compiler... yes
665checking whether gcc accepts -g... yes
666checking for gcc option to accept ISO C89... none needed
667checking for g77... no
668checking for xlf... no
669checking for f77... no
670checking for frt... no
671checking for pgf77... no
672checking for cf77... no
673checking for fort77... no
674checking for fl32... no
675checking for af77... no
676checking for xlf90... no
677checking for f90... no
678checking for pgf90... no
679checking for pghpf... no
680checking for epcf90... no
681checking for gfortran... no
682checking for g95... no
683checking for xlf95... no
684checking for f95... no
685checking for fort... no
686checking for ifort... no
687checking for ifc... no
688checking for efc... no
689checking for pgf95... no
690checking for lf95... no
691checking for ftn... no
692checking whether we are using the GNU Fortran 77 compiler... no
693checking whether  accepts -g... no
694checking how to run the C preprocessor... gcc -E
695checking for memalign... no
696checking Fortran external names
697-c: not found
698configure: WARNING: Unable to test Fortran compiler.  Compiling a test
699program failed to produce an object file
700checking for inline... inline
701checking how to run the C preprocessor... gcc -E
702checking for grep that handles long lines and -e... /usr/bin/grep
703checking for egrep... /usr/bin/grep -E
704checking for ANSI C header files... yes
705checking for sys/types.h... yes
706checking for sys/stat.h... yes
707checking for stdlib.h... yes
708checking for string.h... yes
709checking for memory.h... yes
710checking for strings.h... yes
711checking for inttypes.h... yes
712checking for stdint.h... yes
713checking for unistd.h... yes
714checking for unistd.h... (cached) yes
715checking fcntl.h usability... yes
716checking fcntl.h presence... yes
717checking for fcntl.h... yes
718checking malloc.h usability... no
719checking malloc.h presence... no
720checking for malloc.h... no
721checking stddef.h usability... yes
722checking stddef.h presence... yes
723checking for stddef.h... yes
724checking size of int... 4
725checking size of void *... 4
726checking for int large enough for pointers... yes
727checking size of long long... (cached) 0
728defining MPI_Offset as long in C and integer in Fortran
729Overriding Array test for MPICH2
730checking for weak symbol support... pragma weak
731checking that weak symbols are visible to other files... yes
732checking that the compiler correctly implements weak symbols... yes
733checking whether struct flock compatible with MPI_Offset... yes
734checking for pvfs2-config... notfound
735checking configured file systems... testfs ufs nfs
736configure: WARNING: File locks may not work with NFS.  See the Installation and
737users manual for instructions on testing and if necessary fixing this
738checking for library containing aio_write... none required
739checking signal.h usability... yes
740checking signal.h presence... yes
741checking for signal.h... yes
742checking if aio.h exists and can be compiled... yes
743checking if sys/aio.h exists and can be compiled... yes
744checking whether aio routines can be used... yes
745checking for obsolete two-argument aio_write... no
746checking for obsolete two-argument aio_suspend... no
747checking for aio_fildes member of aiocb structure... yes
748checking for aio_whence member of aiocb structure... no
749checking for aio_handle member of aiocb structure... no
750checking for aio_reqprio member of aiocb structure... yes
751checking for aio_sigevent member of aiocb structure... yes
752checking sys/vfs.h usability... no
753checking sys/vfs.h presence... no
754checking for sys/vfs.h... no
755checking sys/param.h usability... yes
756checking sys/param.h presence... yes
757checking for sys/param.h... yes
758checking sys/mount.h usability... yes
759checking sys/mount.h presence... yes
760checking for sys/mount.h... yes
761checking sys/statvfs.h usability... yes
762checking sys/statvfs.h presence... yes
763checking for sys/statvfs.h... yes
764checking whether struct statfs properly defined... yes
765checking for f_fstypename member of statfs structure... yes
766checking for sys/stat.h... (cached) yes
767checking for sys/types.h... (cached) yes
768checking for unistd.h... (cached) yes
769checking for stat... yes
770checking for st_fstype member of stat structure... no
771checking for sys/types.h... (cached) yes
772checking for sys/statvfs.h... (cached) yes
773checking for sys/vfs.h... (cached) no
774checking for statvfs... yes
775checking for f_basetype member of statvfs structure... no
776checking for unistd.h... (cached) yes
777checking for large file defines... no
778checking for strerror... yes
779checking for doctext... false
780checking for strdup... yes
781checking whether strdup needs a declaration... no
782checking for snprintf... yes
783checking whether snprintf needs a declaration... no
784checking for lstat... yes
785checking whether lstat needs a declaration... yes
786checking for readlink... yes
787checking whether readlink needs a declaration... no
788checking for fsync... yes
789checking whether fsync needs a declaration... no
790checking for ftruncate... yes
791checking whether ftruncate needs a declaration... no
792checking for unistd.h... (cached) yes
793checking for large file defines... none
794setting SYSDEP_INC to
795checking for restrict... __restrict
796checking whether __attribute__ allowed... yes
797checking whether __attribute__((format)) allowed... yes
798setting CC to gcc
799setting F77 to :
800setting TEST_CC to /tmp/tim/mpich2test/bin/mpicc
801setting TEST_F77 to /tmp/tim/mpich2test/bin/mpif77
802setting CFLAGS to  -O2  -DHAVE_ROMIOCONF_H
803setting USER_CFLAGS to
804setting USER_FFLAGS to
805configure: creating ./config.status
806config.status: creating Makefile
807config.status: creating localdefs
808config.status: creating mpi-io/Makefile
809config.status: creating mpi2-other/info/Makefile
810config.status: creating mpi2-other/array/Makefile
811config.status: creating adio/common/Makefile
812config.status: creating test/Makefile
813config.status: creating test/misc.c
814config.status: creating test/large_file.c
815config.status: creating test/runtests
816config.status: creating test-internal/Makefile
817config.status: creating util/romioinstall
818config.status: creating include/mpio.h
819config.status: creating include/mpiof.h
820config.status: creating adio/ad_nfs/Makefile
821config.status: creating adio/ad_ufs/Makefile
822config.status: creating adio/ad_bgl/Makefile
823config.status: creating adio/ad_bglockless/Makefile
824config.status: creating adio/ad_panfs/Makefile
825config.status: creating adio/ad_xfs/Makefile
826config.status: creating adio/ad_sfs/Makefile
827config.status: creating adio/ad_pfs/Makefile
828config.status: creating adio/ad_testfs/Makefile
829config.status: creating adio/ad_pvfs/Makefile
830config.status: creating adio/ad_pvfs2/Makefile
831config.status: creating adio/ad_gridftp/Makefile
832config.status: creating adio/ad_lustre/Makefile
833config.status: creating adio/ad_zoidfs/Makefile
834config.status: creating mpi-io/fortran/Makefile
835config.status: creating mpi2-other/info/fortran/Makefile
836config.status: creating mpi2-other/array/fortran/Makefile
837config.status: creating test/fmisc.f
838config.status: creating test/fcoll_test.f
839config.status: creating test/pfcoll_test.f
840config.status: creating test/fperf.f
841config.status: creating mpi-io/glue/mpich2/Makefile
842config.status: creating mpi-io/glue/mpich1/Makefile
843config.status: creating mpi-io/glue/default/Makefile
844config.status: creating common/dataloop/Makefile
845config.status: creating adio/include/romioconf.h
846config.status: executing default-1 commands
847configure: WARNING: Unrecognized options: --with-atomic-primitives
848configure: configuring subsystem in src/pmi/simple
849configure: WARNING: Unrecognized options: --with-atomic-primitives
850RUNNING CONFIGURE FOR THE SIMPLE PMI
851checking for make... make
852checking whether clock skew breaks make... no
853checking whether make supports include... yes
854checking whether make allows comments in actions... yes
855checking for virtual path format... VPATH
856checking whether make sets CFLAGS... yes
857checking for gcc... gcc
858checking for C compiler default output file name... a.out
859checking whether the C compiler works... yes
860checking whether we are cross compiling... no
861checking for suffix of executables...
862checking for suffix of object files... o
863checking whether we are using the GNU C compiler... yes
864checking whether gcc accepts -g... yes
865checking for gcc option to accept ISO C89... none needed
866checking how to run the C preprocessor... gcc -E
867checking for grep that handles long lines and -e... /usr/bin/grep
868checking for egrep... /usr/bin/grep -E
869checking for ANSI C header files... yes
870checking for sys/types.h... yes
871checking for sys/stat.h... yes
872checking for stdlib.h... yes
873checking for string.h... yes
874checking for memory.h... yes
875checking for strings.h... yes
876checking for inttypes.h... yes
877checking for stdint.h... yes
878checking for unistd.h... yes
879checking for unistd.h... (cached) yes
880checking for string.h... (cached) yes
881checking for stdlib.h... (cached) yes
882checking sys/socket.h usability... yes
883checking sys/socket.h presence... yes
884checking for sys/socket.h... yes
885checking for strings.h... (cached) yes
886checking assert.h usability... yes
887checking assert.h presence... yes
888checking for assert.h... yes
889checking for snprintf... yes
890checking whether snprintf needs a declaration... no
891checking for strncasecmp... yes
892checking for sys/types.h... (cached) yes
893checking sys/param.h usability... yes
894checking sys/param.h presence... yes
895checking for sys/param.h... yes
896checking for sys/socket.h... (cached) yes
897checking netinet/in.h usability... yes
898checking netinet/in.h presence... yes
899checking for netinet/in.h... yes
900checking netinet/tcp.h usability... yes
901checking netinet/tcp.h presence... yes
902checking for netinet/tcp.h... yes
903checking sys/un.h usability... yes
904checking sys/un.h presence... yes
905checking for sys/un.h... yes
906checking netdb.h usability... yes
907checking netdb.h presence... yes
908checking for netdb.h... yes
909checking for library containing socket... none required
910checking for library containing gethostbyname... none required
911checking for socket... yes
912checking for setsockopt... yes
913checking for gethostbyname... yes
914checking whether socklen_t is defined (in sys/socket.h if present)... yes
915checking whether struct hostent contains h_addr_list... yes
916checking whether __attribute__ allowed... yes
917checking whether __attribute__((format)) allowed... yes
918configure: creating ./config.status
919config.status: creating Makefile
920config.status: creating localdefs
921config.status: creating pmiconf.h
922configure: WARNING: Unrecognized options: --with-atomic-primitives
923configure: configuring subsystem in src/pm/mpd
924configure: WARNING: Unrecognized options: --with-atomic-primitives
925Configuring with args --prefix=/home/tim/mpich2-test --with-atomic-primitives=auto_allow_emulation
926checking for gcc... gcc
927checking for C compiler default output file name... a.out
928checking whether the C compiler works... yes
929checking whether we are cross compiling... no
930checking for suffix of executables...
931checking for suffix of object files... o
932checking whether we are using the GNU C compiler... yes
933checking whether gcc accepts -g... yes
934checking for gcc option to accept ISO C89... none needed
935checking whether make sets $(MAKE)... yes
936checking whether ln -s works... yes
937checking for a BSD-compatible install... /usr/bin/install -c
938checking whether install /usr/bin/install -c works... yes
939Using INSTALL=/usr/bin/install -c
940checking for totalview... no
941checking for python2.5... no
942checking for python2.4... no
943checking for python2.3... no
944checking for python2.2... no
945checking for python2... no
946checking for python... python
947checking that python is a valid python version... yes
948checking that the cPickle module is available for python... yes
949checking for library containing socket... none required
950checking how to run the C preprocessor... gcc -E
951checking for grep that handles long lines and -e... /usr/bin/grep
952checking for egrep... /usr/bin/grep -E
953checking for ANSI C header files... yes
954checking for sys/wait.h that is POSIX.1 compatible... yes
955checking for sys/types.h... yes
956checking for sys/stat.h... yes
957checking for stdlib.h... yes
958checking for string.h... yes
959checking for memory.h... yes
960checking for strings.h... yes
961checking for inttypes.h... yes
962checking for stdint.h... yes
963checking for unistd.h... yes
964checking fcntl.h usability... yes
965checking fcntl.h presence... yes
966checking for fcntl.h... yes
967checking for strings.h... (cached) yes
968checking sys/time.h usability... yes
969checking sys/time.h presence... yes
970checking for sys/time.h... yes
971checking for unistd.h... (cached) yes
972checking for stdlib.h... (cached) yes
973checking sys/param.h usability... yes
974checking sys/param.h presence... yes
975checking for sys/param.h... yes
976checking for putenv... yes
977checking for socket... yes
978checking for snprintf... yes
979checking whether snprintf needs a declaration... no
980configure: creating ./config.status
981config.status: creating Makefile
982config.status: creating mpdconf.h
983configure: WARNING: Unrecognized options: --with-atomic-primitives
984configure: configuring subsystem in src/pm/hydra
985checking for a BSD-compatible install... /usr/bin/install -c
986checking whether build environment is sane... yes
987checking for a thread-safe mkdir -p... mkdir -p
988checking for gawk... no
989checking for mawk... no
990checking for nawk... nawk
991checking whether make sets $(MAKE)... yes
992checking for style of include used by make... GNU
993checking for gcc... gcc
994checking for C compiler default output file name... a.out
995checking whether the C compiler works... yes
996checking whether we are cross compiling... no
997checking for suffix of executables...
998checking for suffix of object files... o
999checking whether we are using the GNU C compiler... yes
1000checking whether gcc accepts -g... yes
1001checking for gcc option to accept ISO C89... none needed
1002checking dependency style of gcc... gcc3
1003checking how to run the C preprocessor... gcc -E
1004checking for grep that handles long lines and -e... /usr/bin/grep
1005checking for egrep... /usr/bin/grep -E
1006checking for ANSI C header files... yes
1007checking for sys/types.h... yes
1008checking for sys/stat.h... yes
1009checking for stdlib.h... yes
1010checking for string.h... yes
1011checking for memory.h... yes
1012checking for strings.h... yes
1013checking for inttypes.h... yes
1014checking for stdint.h... yes
1015checking for unistd.h... yes
1016checking for size_t... yes
1017checking for gcc... (cached) gcc
1018checking whether we are using the GNU C compiler... (cached) yes
1019checking whether gcc accepts -g... (cached) yes
1020checking for gcc option to accept ISO C89... (cached) none needed
1021checking dependency style of gcc... (cached) gcc3
1022checking for ranlib... ranlib
1023checking whether __attribute__ allowed... yes
1024checking whether __attribute__((format)) allowed... yes
1025checking whether the compiler defines __func__... yes
1026checking whether the compiler defines __FUNC__... no
1027checking whether the compiler sets __FUNCTION__... yes
1028checking for unistd.h... (cached) yes
1029checking for stdlib.h... (cached) yes
1030checking for string.h... (cached) yes
1031checking for strings.h... (cached) yes
1032checking stdarg.h usability... yes
1033checking stdarg.h presence... yes
1034checking for stdarg.h... yes
1035checking for sys/types.h... (cached) yes
1036checking sys/socket.h usability... yes
1037checking sys/socket.h presence... yes
1038checking for sys/socket.h... yes
1039checking sched.h usability... yes
1040checking sched.h presence... yes
1041checking for sched.h... yes
1042checking pthread.h usability... yes
1043checking pthread.h presence... yes
1044checking for pthread.h... yes
1045checking for sys/stat.h... (cached) yes
1046checking for pthread_create in -lpthread... yes
1047checking for gettimeofday... yes
1048checking for time... yes
1049checking for strdup... yes
1050checking for sigaction... yes
1051checking for signal... yes
1052checking for usleep... yes
1053checking for alloca... no
1054checking for unsetenv... yes
1055checking for strerror... yes
1056checking for strsignal... yes
1057checking for putenv... yes
1058checking for putenv... (cached) yes
1059checking whether putenv needs a declaration... no
1060checking for environ in unistd.h... no
1061checking for manually declared extern environ... yes
1062checking boot-strap server... ssh,rsh,fork,slurm
1063checking communication subsystem... none
1064checking resource management kernel... dummy
1065checking process manager... pmiserv
1066checking user interface... mpiexec
1067checking communication subsystem... none
1068checking debugging support... no
1069checking warnings... no
1070checking process binding... yes
1071checking whether the compiler allows __VA_ARGS__... checking for strsignal... (cached) yes
1072checking whether strsignal needs a declaration... no
1073checking for sigaction... (cached) yes
1074checking for signal... (cached) yes
1075checking for sigset... no
1076checking for struct sigaction and sa_handler... yes
1077checking for gethostname... yes
1078checking whether gethostname needs a declaration... no
1079checking for a BSD-compatible install... /usr/bin/install -c
1080configure: creating ./config.status
1081config.status: creating Makefile
1082config.status: creating bootstrap/src/bsci_init.c
1083config.status: creating bootstrap/include/bsci.h
1084config.status: creating rmk/src/rmki_init.c
1085config.status: creating rmk/include/rmki.h
1086config.status: creating css/src/cssi_init.c
1087config.status: creating css/include/cssi.h
1088config.status: creating include/hydra_config.h
1089config.status: executing depfiles commands
1090=== configuring in mpl (/tmp/tim/mpich2test/src/pm/hydra/mpl)
1091configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/pm/hydra/mpl/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/pm/hydra/mpl
1092checking for a BSD-compatible install... /usr/bin/install -c
1093checking whether build environment is sane... yes
1094checking for a thread-safe mkdir -p... mkdir -p
1095checking for gawk... no
1096checking for mawk... no
1097checking for nawk... nawk
1098checking whether make sets $(MAKE)... yes
1099checking for style of include used by make... GNU
1100checking for gcc... gcc
1101checking for C compiler default output file name... a.out
1102checking whether the C compiler works... yes
1103checking whether we are cross compiling... no
1104checking for suffix of executables...
1105checking for suffix of object files... o
1106checking whether we are using the GNU C compiler... yes
1107checking whether gcc accepts -g... yes
1108checking for gcc option to accept ISO C89... none needed
1109checking dependency style of gcc... gcc3
1110checking for gcc... (cached) gcc
1111checking whether we are using the GNU C compiler... (cached) yes
1112checking whether gcc accepts -g... (cached) yes
1113checking for gcc option to accept ISO C89... (cached) none needed
1114checking dependency style of gcc... (cached) gcc3
1115checking for ranlib... ranlib
1116checking how to run the C preprocessor... gcc -E
1117checking for grep that handles long lines and -e... /usr/bin/grep
1118checking for egrep... /usr/bin/grep -E
1119checking for ANSI C header files... yes
1120checking for sys/types.h... yes
1121checking for sys/stat.h... yes
1122checking for stdlib.h... yes
1123checking for string.h... yes
1124checking for memory.h... yes
1125checking for strings.h... yes
1126checking for inttypes.h... yes
1127checking for stdint.h... yes
1128checking for unistd.h... yes
1129checking stdio.h usability... yes
1130checking stdio.h presence... yes
1131checking for stdio.h... yes
1132checking for stdlib.h... (cached) yes
1133checking for string.h... (cached) yes
1134checking math.h usability... yes
1135checking math.h presence... yes
1136checking for math.h... yes
1137checking stdarg.h usability... yes
1138checking stdarg.h presence... yes
1139checking for stdarg.h... yes
1140checking for strdup... yes
1141checking whether strdup needs a declaration... no
1142checking for snprintf... yes
1143checking whether snprintf needs a declaration... no
1144checking whether __attribute__ allowed... yes
1145checking whether __attribute__((format)) allowed... yes
1146configure: creating ./config.status
1147config.status: creating Makefile
1148config.status: creating include/mplconf.h
1149config.status: executing include/mplconfig.h commands
1150config.status: creating include/mplconfig.h - prefix MPL for include/mplconf.h defines
1151config.status: executing depfiles commands
1152configure: configuring subsystem in src/pm/gforker
1153RUNNING CONFIGURE FOR THE GFORKER PM
1154checking for gcc... gcc
1155checking for C compiler default output file name... a.out
1156checking whether the C compiler works... yes
1157checking whether we are cross compiling... no
1158checking for suffix of executables...
1159checking for suffix of object files... o
1160checking whether we are using the GNU C compiler... yes
1161checking whether gcc accepts -g... yes
1162checking for gcc option to accept ISO C89... none needed
1163checking for a BSD-compatible install... /usr/bin/install -c
1164checking whether install works... yes
1165checking whether mkdir -p works... yes
1166checking for make... make
1167checking whether clock skew breaks make... no
1168checking whether make supports include... yes
1169checking whether make allows comments in actions... yes
1170checking for virtual path format... VPATH
1171checking whether make sets CFLAGS... yes
1172checking for an ANSI C-conforming const... yes
1173checking for volatile... yes
1174checking for restrict... __restrict
1175checking for inline... inline
1176checking whether __attribute__ allowed... yes
1177checking whether __attribute__((format)) allowed... yes
1178checking for snprintf... yes
1179checking whether snprintf needs a declaration... no
1180checking for strdup... yes
1181checking whether strdup needs a declaration... no
1182checking for setsid... yes
1183checking for isatty... yes
1184checking for getsid... yes
1185checking for library containing socketpair... none required
1186checking how to run the C preprocessor... gcc -E
1187checking for grep that handles long lines and -e... /usr/bin/grep
1188checking for egrep... /usr/bin/grep -E
1189checking for ANSI C header files... yes
1190checking for sys/types.h... yes
1191checking for sys/stat.h... yes
1192checking for stdlib.h... yes
1193checking for string.h... yes
1194checking for memory.h... yes
1195checking for strings.h... yes
1196checking for inttypes.h... yes
1197checking for stdint.h... yes
1198checking for unistd.h... yes
1199checking for sys/types.h... (cached) yes
1200checking signal.h usability... yes
1201checking signal.h presence... yes
1202checking for signal.h... yes
1203checking sys/ptrace.h usability... yes
1204checking sys/ptrace.h presence... yes
1205checking for sys/ptrace.h... yes
1206checking for strsignal... yes
1207checking for sigaction... yes
1208checking for signal... yes
1209checking for sigset... no
1210checking for struct sigaction... yes
1211checking for string.h... (cached) yes
1212checking sys/time.h usability... yes
1213checking sys/time.h presence... yes
1214checking for sys/time.h... yes
1215checking for unistd.h... (cached) yes
1216checking for stdlib.h... (cached) yes
1217checking sys/socket.h usability... yes
1218checking sys/socket.h presence... yes
1219checking for sys/socket.h... yes
1220checking wait.h usability... no
1221checking wait.h presence... no
1222checking for wait.h... no
1223checking errno.h usability... yes
1224checking errno.h presence... yes
1225checking for errno.h... yes
1226configure: creating ./config.status
1227config.status: creating Makefile
1228config.status: creating forkerconf.h
1229=== configuring in ../util (/tmp/tim/mpich2test/src/pm/gforker/../util)
1230configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/pm/gforker/../util/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/pm/gforker/../util
1231RUNNING CONFIGURE FOR THE PM UTILITIES
1232checking for gcc... gcc
1233checking for C compiler default output file name... a.out
1234checking whether the C compiler works... yes
1235checking whether we are cross compiling... no
1236checking for suffix of executables...
1237checking for suffix of object files... o
1238checking whether we are using the GNU C compiler... yes
1239checking whether gcc accepts -g... yes
1240checking for gcc option to accept ISO C89... none needed
1241checking for make... make
1242checking whether clock skew breaks make... no
1243checking whether make supports include... yes
1244checking whether make allows comments in actions... yes
1245checking for virtual path format... VPATH
1246checking whether make sets CFLAGS... yes
1247checking for ar... ar
1248checking for ranlib... ranlib
1249checking for an ANSI C-conforming const... yes
1250checking for volatile... yes
1251checking for restrict... __restrict
1252checking for inline... inline
1253checking whether __attribute__ allowed... yes
1254checking whether __attribute__((format)) allowed... yes
1255checking for strtol... yes
1256checking for time... yes
1257checking for gettimeofday... yes
1258checking whether struct hostent contains h_addr_list... yes
1259checking how to run the C preprocessor... gcc -E
1260checking for grep that handles long lines and -e... /usr/bin/grep
1261checking for egrep... /usr/bin/grep -E
1262checking for ANSI C header files... yes
1263checking for sys/types.h... yes
1264checking for sys/stat.h... yes
1265checking for stdlib.h... yes
1266checking for string.h... yes
1267checking for memory.h... yes
1268checking for strings.h... yes
1269checking for inttypes.h... yes
1270checking for stdint.h... yes
1271checking for unistd.h... yes
1272checking for pid_t... yes
1273checking for setsid... yes
1274checking for isatty... yes
1275checking for getsid... yes
1276checking whether getsid is prototyped in unistd.h... yes
1277checking for unsetenv... yes
1278checking for cygwin1.dll in /bin... yes
1279checking for environ in unistd.h... no
1280checking for extern environ in runtime... yes
1281checking for library containing socketpair... none required
1282checking for ANSI C header files... (cached) yes
1283checking for sys/types.h... (cached) yes
1284checking signal.h usability... yes
1285checking signal.h presence... yes
1286checking for signal.h... yes
1287checking sys/ptrace.h usability... yes
1288checking sys/ptrace.h presence... yes
1289checking for sys/ptrace.h... yes
1290checking sys/uio.h usability... yes
1291checking sys/uio.h presence... yes
1292checking for sys/uio.h... yes
1293checking for unistd.h... (cached) yes
1294checking whether struct iovec is defined in sys/uio.h... yes
1295checking for strsignal... yes
1296checking whether strsignal needs a declaration... no
1297checking for snprintf... yes
1298checking for strdup... yes
1299checking for sigaction... yes
1300checking for signal... yes
1301checking for sigset... no
1302checking for struct sigaction and sa_handler... yes
1303checking whether snprintf needs a declaration... no
1304checking whether strdup needs a declaration... no
1305checking for putenv... yes
1306checking whether putenv needs a declaration... no
1307checking for gethostname... yes
1308checking whether gethostname needs a declaration... no
1309checking for select... yes
1310checking sys/select.h usability... yes
1311checking sys/select.h presence... yes
1312checking for sys/select.h... yes
1313checking whether FD_ZERO works... yes
1314checking for sched_setaffinity... no
1315checking for sched_getaffinity... no
1316checking for bindprocessor... no
1317checking for thread_policy_set... no
1318checking for string.h... (cached) yes
1319checking sys/time.h usability... yes
1320checking sys/time.h presence... yes
1321checking for sys/time.h... yes
1322checking time.h usability... yes
1323checking time.h presence... yes
1324checking for time.h... yes
1325checking for stdlib.h... (cached) yes
1326checking sys/socket.h usability... yes
1327checking sys/socket.h presence... yes
1328checking for sys/socket.h... yes
1329checking wait.h usability... no
1330checking wait.h presence... no
1331checking for wait.h... no
1332checking errno.h usability... yes
1333checking errno.h presence... yes
1334checking for errno.h... yes
1335checking whether socklen_t is defined (in sys/socket.h if present)... yes
1336checking for etags... true
1337configure: creating ./config.status
1338config.status: creating Makefile
1339config.status: creating test/Makefile
1340config.status: creating pmutilconf.h
1341configure: configuring subsystem in src/mpe2
1342Configuring MPE Profiling System with  '--prefix=/home/tim/mpich2-test' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= '
1343checking gnumake... no
1344checking BSD 4.4 make... no - whew
1345checking OSF V3 make... no
1346checking for virtual path format... VPATH
1347This MPE build is part of the MPICH2 build
1348checking for gcc... gcc
1349checking for C compiler default output file name... a.out
1350checking whether the C compiler works... yes
1351checking whether we are cross compiling... no
1352checking for suffix of executables...
1353checking for suffix of object files... o
1354checking whether we are using the GNU C compiler... yes
1355checking whether gcc accepts -g... yes
1356checking for gcc option to accept ISO C89... none needed
1357checking whether MPI_CC has been set ... /tmp/tim/mpich2test/bin/mpicc
1358checking for g77... no
1359checking for xlf... no
1360checking for f77... no
1361checking for frt... no
1362checking for pgf77... no
1363checking for cf77... no
1364checking for fort77... no
1365checking for fl32... no
1366checking for af77... no
1367checking for xlf90... no
1368checking for f90... no
1369checking for pgf90... no
1370checking for pghpf... no
1371checking for epcf90... no
1372checking for gfortran... no
1373checking for g95... no
1374checking for xlf95... no
1375checking for f95... no
1376checking for fort... no
1377checking for ifort... no
1378checking for ifc... no
1379checking for efc... no
1380checking for pgf95... no
1381checking for lf95... no
1382checking for ftn... no
1383checking whether we are using the GNU Fortran 77 compiler... no
1384checking whether  accepts -g... no
1385checking whether MPI_F77 has been set ... /tmp/tim/mpich2test/bin/mpif77
1386checking how to run the C preprocessor... gcc -E
1387checking whether ln -s works... yes
1388checking for a BSD-compatible install... /usr/bin/install -c
1389checking whether install works... yes
1390checking for ranlib... ranlib
1391checking whether install breaks libraries... no
1392checking for leftover Makefiles in subpackages ... none
1393configure: creating ./config.status
1394config.status: creating Makefile
1395config.status: creating sbin/mpetestlink
1396config.status: creating sbin/mpetestexec
1397config.status: creating sbin/mpetestexeclog
1398config.status: creating sbin/mpeinstall
1399config.status: creating sbin/mpecheckinstall
1400config.status: WARNING:  '/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/sbin/mpecheckinstall.in' seems to ignore the --datarootdir setting
1401config.status: creating sbin/mpecheckbuild
1402config.status: creating etc/mpe_help.conf
1403config.status: creating etc/mpe_f77env.conf
1404config.status: creating mpe_conf.h
1405config.status: executing default-1 commands
1406=== configuring in src/misc (/tmp/tim/mpich2test/src/mpe2/src/misc)
1407configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/misc/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/misc
1408Configuring MPE Miscellaneous Library with  '--disable-option-checking' '--prefix=/home/tim/mpich2-test' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' '--cache-file=/dev/null' '--srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/misc'
1409checking gnumake... no
1410checking BSD 4.4 make... no - whew
1411checking OSF V3 make... no
1412checking for virtual path format... VPATH
1413checking build system type... i386-unknown-freebsd7.2
1414checking host system type... i386-unknown-freebsd7.2
1415checking for gcc... gcc
1416checking for C compiler default output file name... a.out
1417checking whether the C compiler works... yes
1418checking whether we are cross compiling... no
1419checking for suffix of executables...
1420checking for suffix of object files... o
1421checking whether we are using the GNU C compiler... yes
1422checking whether gcc accepts -g... yes
1423checking for gcc option to accept ISO C89... none needed
1424checking for ar... ar
1425checking for ranlib... ranlib
1426checking how to run the C preprocessor... gcc -E
1427checking for dbx... no
1428checking for gdb... /usr/bin/gdb
1429checking for grep that handles long lines and -e... /usr/bin/grep
1430checking for egrep... /usr/bin/grep -E
1431checking for ANSI C header files... yes
1432checking for an ANSI C-conforming const... yes
1433checking for sysinfo... no
1434checking for uname... yes
1435checking for gethostbyname... yes
1436checking for sys/types.h... yes
1437checking for sys/stat.h... yes
1438checking for stdlib.h... yes
1439checking for string.h... yes
1440checking for memory.h... yes
1441checking for strings.h... yes
1442checking for inttypes.h... yes
1443checking for stdint.h... yes
1444checking for unistd.h... yes
1445checking for unistd.h... (cached) yes
1446checking for stdlib.h... (cached) yes
1447checking for string.h... (cached) yes
1448checking netdb.h usability... yes
1449checking netdb.h presence... yes
1450checking for netdb.h... yes
1451checking sys/systeminfo.h usability... no
1452checking sys/systeminfo.h presence... no
1453checking for sys/systeminfo.h... no
1454checking for sys/types.h... (cached) yes
1455checking for sighandler_t... no
1456checking for kill... yes
1457checking whether kill needs a declaration... no
1458configure: creating ./config.status
1459config.status: creating Makefile
1460config.status: creating src/Makefile
1461config.status: creating src/dbxerr.c
1462config.status: creating mpe_misc_conf.h
1463=== configuring in src/callstack (/tmp/tim/mpich2test/src/mpe2/src/callstack)
1464configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/callstack/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/callstack
1465Configuring MPE CallStack Library with  '--disable-option-checking' '--prefix=/home/tim/mpich2-test' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' '--cache-file=/dev/null' '--srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/callstack'
1466checking gnumake... no
1467checking BSD 4.4 make... no - whew
1468checking OSF V3 make... no
1469checking for virtual path format... VPATH
1470checking for gcc... gcc
1471checking for C compiler default output file name... a.out
1472checking whether the C compiler works... yes
1473checking whether we are cross compiling... no
1474checking for suffix of executables...
1475checking for suffix of object files... o
1476checking whether we are using the GNU C compiler... yes
1477checking whether gcc accepts -g... yes
1478checking for gcc option to accept ISO C89... none needed
1479checking for ar... ar
1480checking for ranlib... ranlib
1481checking how to run the C preprocessor... gcc -E
1482checking for grep that handles long lines and -e... /usr/bin/grep
1483checking for egrep... /usr/bin/grep -E
1484checking for ANSI C header files... yes
1485checking for an ANSI C-conforming const... yes
1486checking for inline... inline
1487checking for sys/types.h... yes
1488checking for sys/stat.h... yes
1489checking for stdlib.h... yes
1490checking for string.h... yes
1491checking for memory.h... yes
1492checking for strings.h... yes
1493checking for inttypes.h... yes
1494checking for stdint.h... yes
1495checking for unistd.h... yes
1496checking stdio.h usability... yes
1497checking stdio.h presence... yes
1498checking for stdio.h... yes
1499checking for string.h... (cached) yes
1500checking for unistd.h... (cached) yes
1501checking fcntl.h usability... yes
1502checking fcntl.h presence... yes
1503checking for fcntl.h... yes
1504checking execinfo.h usability... no
1505checking execinfo.h presence... no
1506checking for execinfo.h... no
1507checking ucontext.h usability... yes
1508checking ucontext.h presence... yes
1509checking for ucontext.h... yes
1510checking whether <ucontext.h> defines printstack() ... yes
1511checking whether printstack() can be linked ... no
1512checking for fdopen... yes
1513checking whether fdopen needs a declaration... no
1514configure: creating ./config.status
1515config.status: creating Makefile
1516config.status: creating src/Makefile
1517config.status: creating include/mpe_callstack.h
1518config.status: creating etc/mpe_callstack_ldflags.conf
1519config.status: creating mpe_callstack_conf.h
1520=== configuring in src/logging (/tmp/tim/mpich2test/src/mpe2/src/logging)
1521configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/logging/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/logging
1522Configuring MPE Logging Library and Tools with  '--disable-option-checking' '--prefix=/home/tim/mpich2-test' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' '--cache-file=/dev/null' '--srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/logging'
1523checking gnumake... no
1524checking BSD 4.4 make... no - whew
1525checking OSF V3 make... no
1526checking for virtual path format... VPATH
1527checking for gcc... gcc
1528checking for C compiler default output file name... a.out
1529checking whether the C compiler works... yes
1530checking whether we are cross compiling... no
1531checking for suffix of executables...
1532checking for suffix of object files... o
1533checking whether we are using the GNU C compiler... yes
1534checking whether gcc accepts -g... yes
1535checking for gcc option to accept ISO C89... none needed
1536checking for ar... ar
1537checking for ranlib... ranlib
1538checking how to run the C preprocessor... gcc -E
1539checking for grep that handles long lines and -e... /usr/bin/grep
1540checking for egrep... /usr/bin/grep -E
1541checking for ANSI C header files... yes
1542checking for an ANSI C-conforming const... yes
1543checking for sys/types.h... yes
1544checking for sys/stat.h... yes
1545checking for stdlib.h... yes
1546checking for string.h... yes
1547checking for memory.h... yes
1548checking for strings.h... yes
1549checking for inttypes.h... yes
1550checking for stdint.h... yes
1551checking for unistd.h... yes
1552checking whether byte ordering is bigendian... no
1553checking stdio.h usability... yes
1554checking stdio.h presence... yes
1555checking for stdio.h... yes
1556checking for stdlib.h... (cached) yes
1557checking for string.h... (cached) yes
1558checking for unistd.h... (cached) yes
1559checking sys/time.h usability... yes
1560checking sys/time.h presence... yes
1561checking for sys/time.h... yes
1562checking for sys/types.h... (cached) yes
1563checking sys/bitypes.h usability... no
1564checking sys/bitypes.h presence... no
1565checking for sys/bitypes.h... no
1566checking for sys/stat.h... (cached) yes
1567checking fcntl.h usability... yes
1568checking fcntl.h presence... yes
1569checking for fcntl.h... yes
1570checking for header that defines C99 integer types, intXX_t ... <stdint.h>
1571checking for inttypes.h... (cached) yes
1572checking whether <inttypes.h> defines the PRIdXX macros ... yes
1573checking if <stdint.h> can be behind system headers ... yes
1574checking size of void *... 4
1575checking for address-sized integer ... CLOG_int32_t
1576checking build system type... i386-unknown-freebsd7.2
1577checking host system type... i386-unknown-freebsd7.2
1578checking for gethostname... yes
1579checking whether gethostname needs a declaration... no
1580checking for snprintf... yes
1581checking whether snprintf needs a declaration... no
1582checking for mkstemp... yes
1583checking whether mkstemp needs a declaration... no
1584checking for srand48... yes
1585checking whether srand48 needs a declaration... no
1586checking for lrand48... yes
1587checking whether lrand48 needs a declaration... no
1588checking for special C compiler options needed for large files... no
1589checking for _FILE_OFFSET_BITS value needed for large files... no
1590checking for O_LARGEFILE for open() ... no
1591checking for O_BINARY for open() ... no
1592checking pthread.h usability... yes
1593checking pthread.h presence... yes
1594checking for pthread.h... yes
1595checking for pthread_mutex_lock in -lpthread... yes
1596configure: creating ./config.status
1597config.status: creating Makefile
1598config.status: creating src/Makefile
1599config.status: creating include/clog_inttypes.h
1600config.status: creating include/mpi_null.h
1601config.status: creating include/mpe_log_thread.h
1602config.status: creating etc/mpe_log.conf
1603config.status: creating etc/mpe_nolog.conf
1604config.status: creating etc/mpe_log_postlib.conf
1605config.status: creating mpe_logging_conf.h
1606=== configuring in src/wrappers (/tmp/tim/mpich2test/src/mpe2/src/wrappers)
1607configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/wrappers/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/wrappers
1608Configuring MPE Wrapper Libraries For MPI with  '--disable-option-checking' '--prefix=/home/tim/mpich2-test' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' '--cache-file=/dev/null' '--srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/wrappers'
1609checking gnumake... no
1610checking BSD 4.4 make... no - whew
1611checking OSF V3 make... no
1612checking for virtual path format... VPATH
1613checking for gcc... gcc
1614checking for C compiler default output file name... a.out
1615checking whether the C compiler works... yes
1616checking whether we are cross compiling... no
1617checking for suffix of executables...
1618checking for suffix of object files... o
1619checking whether we are using the GNU C compiler... yes
1620checking whether gcc accepts -g... yes
1621checking for gcc option to accept ISO C89... none needed
1622checking for ar... ar
1623checking for ranlib... ranlib
1624checking how to run the C preprocessor... gcc -E
1625checking for grep that handles long lines and -e... /usr/bin/grep
1626checking for egrep... /usr/bin/grep -E
1627checking for ANSI C header files... yes
1628checking for an ANSI C-conforming const... yes
1629checking for sys/types.h... yes
1630checking for sys/stat.h... yes
1631checking for stdlib.h... yes
1632checking for string.h... yes
1633checking for memory.h... yes
1634checking for strings.h... yes
1635checking for inttypes.h... yes
1636checking for stdint.h... yes
1637checking for unistd.h... yes
1638checking stdio.h usability... yes
1639checking stdio.h presence... yes
1640checking for stdio.h... yes
1641checking for stdlib.h... (cached) yes
1642checking for string.h... (cached) yes
1643checking stdarg.h usability... yes
1644checking stdarg.h presence... yes
1645checking for stdarg.h... yes
1646checking for working alloca.h... no
1647checking for alloca... yes
1648checking for stdarg is correct... yes
1649checking if compiler accepts prototypes ... yes
1650checking build system type... i386-unknown-freebsd7.2
1651checking host system type... i386-unknown-freebsd7.2
1652checking for safe PMPI invocations ... no
1653configure: creating ./config.status
1654config.status: creating Makefile
1655config.status: creating src/Makefile
1656config.status: creating test/Makefile
1657config.status: creating etc/mpe_f77env.conf
1658config.status: creating etc/mpe_mpilog.conf
1659config.status: creating etc/mpe_mpitrace.conf
1660config.status: creating mpe_wrappers_conf.h
1661=== configuring in src/graphics (/tmp/tim/mpich2test/src/mpe2/src/graphics)
1662configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/graphics/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/graphics
1663Configuring MPE X Graphics Library with  '--disable-option-checking' '--prefix=/home/tim/mpich2-test' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' '--cache-file=/dev/null' '--srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/graphics'
1664checking gnumake... no
1665checking BSD 4.4 make... no - whew
1666checking OSF V3 make... no
1667checking for virtual path format... VPATH
1668checking for gcc... gcc
1669checking for C compiler default output file name... a.out
1670checking whether the C compiler works... yes
1671checking whether we are cross compiling... no
1672checking for suffix of executables...
1673checking for suffix of object files... o
1674checking whether we are using the GNU C compiler... yes
1675checking whether gcc accepts -g... yes
1676checking for gcc option to accept ISO C89... none needed
1677checking for ar... ar
1678checking for ranlib... ranlib
1679checking how to run the C preprocessor... gcc -E
1680checking for X... no
1681configure: WARNING:  Could not find appropriate X windows libraries.  MPE routines that make use of X11 graphics will NOT be built unless you put X windows libraries in your path and reconfigure! 
1682=== configuring in src/collchk (/tmp/tim/mpich2test/src/mpe2/src/collchk)
1683configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/collchk/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/collchk
1684Configuring MPE Collective and Datatype Checking Library with  '--disable-option-checking' '--prefix=/home/tim/mpich2-test' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' '--cache-file=/dev/null' '--srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/collchk'
1685checking gnumake... no
1686checking BSD 4.4 make... no - whew
1687checking OSF V3 make... no
1688checking for virtual path format... VPATH
1689checking build system type... i386-unknown-freebsd7.2
1690checking host system type... i386-unknown-freebsd7.2
1691checking for gcc... gcc
1692checking for C compiler default output file name... a.out
1693checking whether the C compiler works... yes
1694checking whether we are cross compiling... no
1695checking for suffix of executables...
1696checking for suffix of object files... o
1697checking whether we are using the GNU C compiler... yes
1698checking whether gcc accepts -g... yes
1699checking for gcc option to accept ISO C89... none needed
1700checking for ar... ar
1701checking for ranlib... ranlib
1702checking how to run the C preprocessor... gcc -E
1703checking for grep that handles long lines and -e... /usr/bin/grep
1704checking for egrep... /usr/bin/grep -E
1705checking for ANSI C header files... yes
1706checking for an ANSI C-conforming const... yes
1707checking for sys/types.h... yes
1708checking for sys/stat.h... yes
1709checking for stdlib.h... yes
1710checking for string.h... yes
1711checking for memory.h... yes
1712checking for strings.h... yes
1713checking for inttypes.h... yes
1714checking for stdint.h... yes
1715checking for unistd.h... yes
1716checking stdio.h usability... yes
1717checking stdio.h presence... yes
1718checking for stdio.h... yes
1719checking for stdlib.h... (cached) yes
1720checking for string.h... (cached) yes
1721checking for unistd.h... (cached) yes
1722checking for working alloca.h... no
1723checking for alloca... yes
1724configure: creating ./config.status
1725config.status: creating Makefile
1726config.status: creating src/Makefile
1727config.status: creating test/Makefile
1728config.status: creating etc/mpe_mpicheck.conf
1729config.status: creating mpe_collchk_conf.h
1730=== configuring in src/slog2sdk (/tmp/tim/mpich2test/src/mpe2/src/slog2sdk)
1731configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/slog2sdk/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/slog2sdk
1732Configuring SLOG2SDK with  '--disable-option-checking' '--prefix=/home/tim/mpich2-test' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/tim/mpich2test/bin/mpicc' 'MPI_F77=/tmp/tim/mpich2test/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=      ' 'CPPFLAGS= -I/home/tim/libraries/mpich2-trunk-r4843/src/openpa/src -I/tmp/tim/mpich2test/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=' 'FFLAGS= ' '--cache-file=/dev/null' '--srcdir=/home/tim/libraries/mpich2-trunk-r4843/src/mpe2/src/slog2sdk'
1733checking gnumake... no
1734checking BSD 4.4 make... no - whew
1735checking OSF V3 make... no
1736checking for virtual path format... VPATH
1737checking for a BSD-compatible install... /usr/bin/install -c
1738checking whether install works... yes
1739checking if CLASSPATH is set... no, good to go
1740checking build system type... i386-unknown-freebsd7.2
1741checking host system type... i386-unknown-freebsd7.2
1742checking for java in user's PATH... not found
1743checking for java in user's PATH... not found
1744configure: WARNING:  No Java Virtual Machine can be found anywhere!
1745MPE2:  "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/collchk" have been configured
1746configure: WARNING: Could not define Fortran MPI datatypes for C
1747checking the sizeof MPI_Offset... 4
1748configure: creating ./config.status
1749config.status: creating Makefile
1750config.status: creating src/Makefile
1751config.status: creating src/include/Makefile
1752config.status: creating src/include/mpich2info.h
1753config.status: creating mpich2-doxygen
1754config.status: creating src/include/mpichtimer.h
1755config.status: creating src/binding/Makefile
1756config.status: creating src/binding/cxx/Makefile
1757config.status: creating src/binding/cxx/mpicxx.h
1758config.status: creating src/binding/f77/Makefile
1759config.status: creating src/binding/f77/mpif.h
1760config.status: creating src/binding/f77/setbotf.f
1761config.status: creating src/binding/f90/Makefile
1762config.status: creating src/binding/f90/mpi_sizeofs.f90
1763config.status: creating src/packaging/Makefile
1764config.status: creating src/packaging/pkgconfig/mpich2-ch3.pc
1765config.status: creating src/packaging/pkgconfig/Makefile
1766config.status: creating src/packaging/envmods/mpich2.module
1767config.status: WARNING:  '/home/tim/libraries/mpich2-trunk-r4843/src/packaging/envmods/mpich2.module.in' seems to ignore the --datarootdir setting
1768config.status: creating src/packaging/envmods/Makefile
1769config.status: WARNING:  '/home/tim/libraries/mpich2-trunk-r4843/src/packaging/envmods/Makefile.in' seems to ignore the --datarootdir setting
1770config.status: creating src/env/mpixxx_opts.conf
1771config.status: creating src/env/mpicc
1772config.status: creating src/env/mpicc.conf
1773config.status: creating src/env/mpicc.bash
1774config.status: creating src/env/mpicxx
1775config.status: creating src/env/mpicxx.conf
1776config.status: creating src/env/mpicxx.bash
1777config.status: creating src/env/mpif77
1778config.status: creating src/env/mpif77.conf
1779config.status: creating src/env/mpif77.bash
1780config.status: creating src/env/mpif90
1781config.status: creating src/env/mpif90.conf
1782config.status: creating src/env/mpif90.bash
1783config.status: creating src/env/parkill
1784config.status: creating src/env/Makefile
1785config.status: creating src/util/createshlib
1786config.status: creating src/mpi/Makefile
1787config.status: creating src/mpi/attr/Makefile
1788config.status: creating src/mpi/coll/Makefile
1789config.status: creating src/mpi/comm/Makefile
1790config.status: creating src/mpi/datatype/Makefile
1791config.status: creating src/mpi/debugger/Makefile
1792config.status: creating src/mpi/errhan/Makefile
1793config.status: creating src/mpi/group/Makefile
1794config.status: creating src/mpi/init/Makefile
1795config.status: creating src/mpi/misc/Makefile
1796config.status: creating src/mpi/pt2pt/Makefile
1797config.status: creating src/mpi/rma/Makefile
1798config.status: creating src/mpi/spawn/Makefile
1799config.status: creating src/mpi/timer/Makefile
1800config.status: creating src/mpi/topo/Makefile
1801config.status: creating src/mpid/Makefile
1802config.status: creating src/mpid/common/Makefile
1803config.status: creating src/mpid/common/datatype/Makefile
1804config.status: creating src/mpid/common/datatype/dataloop/Makefile
1805config.status: creating src/pm/Makefile
1806config.status: creating src/pmi/Makefile
1807config.status: creating src/pmi/simple/Makefile
1808config.status: creating src/nameserv/Makefile
1809config.status: creating src/nameserv/file/Makefile
1810config.status: creating src/nameserv/mpd/Makefile
1811config.status: creating src/nameserv/pmi/Makefile
1812config.status: creating src/nameserv/test/Makefile
1813config.status: creating src/util/Makefile
1814config.status: creating src/util/info/Makefile
1815config.status: creating src/util/instrm/Makefile
1816config.status: creating src/util/thread/Makefile
1817config.status: creating src/util/thread/mpe_thread.h
1818config.status: creating src/util/mem/Makefile
1819config.status: creating src/util/msgs/Makefile
1820config.status: creating src/util/param/Makefile
1821config.status: creating src/util/dbg/Makefile
1822config.status: creating src/util/dbg/getfuncstack
1823config.status: creating src/util/osserv/Makefile
1824config.status: creating src/util/procmap/Makefile
1825config.status: creating src/util/other/Makefile
1826config.status: creating src/include/mpi.h
1827config.status: creating test/Makefile
1828config.status: creating test/util/Makefile
1829config.status: creating test/basic/Makefile
1830config.status: creating test/commands/Makefile
1831config.status: creating test/commands/cmdtests
1832config.status: creating test/mpid/Makefile
1833config.status: creating test/mpid/ch3/Makefile
1834config.status: creating test/util/timer/Makefile
1835config.status: creating examples/Makefile
1836config.status: creating examples/f77/Makefile
1837config.status: creating examples/f90/Makefile
1838config.status: creating examples/cxx/Makefile
1839config.status: creating src/util/logging/Makefile
1840config.status: creating src/util/logging/common/Makefile
1841config.status: creating doc/Makefile
1842config.status: creating doc/mansrc/Makefile
1843config.status: creating doc/mansrc/createhtmlindex
1844config.status: creating doc/refman/Makefile
1845config.status: creating doc/installguide/Makefile
1846config.status: creating doc/userguide/Makefile
1847config.status: creating doc/logging/Makefile
1848config.status: creating doc/design/Makefile
1849config.status: creating doc/smpd/Makefile
1850config.status: creating doc/windev/Makefile
1851config.status: creating src/include/mpichconf.h
1852config.status: executing default-1 commands
1853config.status: executing default-2 commands
1854config.status: executing default-3 commands
1855config.status: executing default-4 commands
1856copying /home/tim/libraries/mpich2-trunk-r4843/src/util/thread/mpe_thread_posix.c to src/util/thread/mpe_thread.c
1857moving mpe_thread.h to src/include
1858config.status: executing default-5 commands
1859config.status: executing default-6 commands
1860config.status: executing default-7 commands
1861config.status: executing default-8 commands
1862config.status: executing default-9 commands
1863Updating dependency directories .deps
1864config.status: executing default-10 commands
1865config.status: executing default-11 commands
1866config.status: executing default-12 commands
1867config.status: executing default-13 commands
1868config.status: executing default-14 commands
1869=== configuring in test/mpi (/tmp/tim/mpich2test/test/mpi)
1870configure: running /bin/sh /home/tim/libraries/mpich2-trunk-r4843/test/mpi/configure --disable-option-checking '--prefix=/home/tim/mpich2-test'  --cache-file=/dev/null --srcdir=/home/tim/libraries/mpich2-trunk-r4843/test/mpi
1871RUNNING CONFIGURE FOR MPI TESTS
1872checking for make... make
1873checking whether clock skew breaks make... no
1874checking whether make supports include... yes
1875checking whether make allows comments in actions... yes
1876checking for virtual path format... VPATH
1877checking whether make sets CFLAGS... yes
1878checking for gcc... gcc
1879checking for C compiler default output file name... a.out
1880checking whether the C compiler works... yes
1881checking whether we are cross compiling... no
1882checking for suffix of executables...
1883checking for suffix of object files... o
1884checking whether we are using the GNU C compiler... yes
1885checking whether gcc accepts -g... yes
1886checking for gcc option to accept ISO C89... none needed
1887checking whether we are using the GNU C++ compiler... yes
1888checking whether c++ accepts -g... yes
1889checking whether long double is supported... yes
1890checking whether long long is supported... yes
1891checking for an ANSI C-conforming const... yes
1892checking for restrict... __restrict
1893checking how to run the C preprocessor... gcc -E
1894checking for grep that handles long lines and -e... /usr/bin/grep
1895checking for egrep... /usr/bin/grep -E
1896checking for ANSI C header files... yes
1897checking for sys/types.h... yes
1898checking for sys/stat.h... yes
1899checking for stdlib.h... yes
1900checking for string.h... yes
1901checking for memory.h... yes
1902checking for strings.h... yes
1903checking for inttypes.h... yes
1904checking for stdint.h... yes
1905checking for unistd.h... yes
1906checking for unistd.h... (cached) yes
1907checking stdarg.h usability... yes
1908checking stdarg.h presence... yes
1909checking for stdarg.h... yes
1910checking for string.h... (cached) yes
1911checking for stdlib.h... (cached) yes
1912checking for memory.h... (cached) yes
1913checking pthread.h usability... yes
1914checking pthread.h presence... yes
1915checking for pthread.h... yes
1916checking for pthread_create... no
1917checking for pthread_yield... no
1918checking for pthread_barrier_init... no
1919checking for pthread_barrier_wait... no
1920Configuring tests for MPICH2
1921checking whether struct hostent contains h_addr_list... no
1922configure: WARNING: Selecting integer*8 as the Fortran type for MPI_Offset
1923configure: WARNING: Selecting integer as the Fortran type for MPI_Aint
1924checking whether <iostream> available... yes
1925checking whether the compiler implements namespaces... yes
1926checking whether the compiler implements the namespace std... yes
1927checking whether MPI_2DOUBLE_COMPLEX is available... no
1928checking size of void *... 0
1929checking size of int... 0
1930checking size of long... 0
1931checking size of long long... 0
1932checking size of short... 0
1933checking for C integer type of address size... int
1934checking for perl... no
1935checking for etags... true
1936configure: creating ./config.status
1937config.status: creating maint/testmerge
1938config.status: creating runtests
1939config.status: creating Makefile
1940config.status: creating basic/Makefile
1941config.status: creating attr/Makefile
1942config.status: creating util/Makefile
1943config.status: creating coll/Makefile
1944config.status: creating comm/Makefile
1945config.status: creating datatype/Makefile
1946config.status: creating errhan/Makefile
1947config.status: creating group/Makefile
1948config.status: creating info/Makefile
1949config.status: creating init/Makefile
1950config.status: creating pt2pt/Makefile
1951config.status: creating rma/Makefile
1952config.status: creating spawn/Makefile
1953config.status: creating topo/Makefile
1954config.status: creating io/Makefile
1955config.status: creating f77/Makefile
1956config.status: creating f77/attr/Makefile
1957config.status: creating f77/attr/attraints.h
1958config.status: creating f77/pt2pt/attr1aints.h
1959config.status: creating f77/ext/add1size.h
1960config.status: creating f77/datatype/Makefile
1961config.status: creating f77/datatype/typeaints.h
1962config.status: creating f77/util/Makefile
1963config.status: creating f77/coll/Makefile
1964config.status: creating f77/comm/Makefile
1965config.status: creating f77/topo/Makefile
1966config.status: creating f77/init/Makefile
1967config.status: creating f77/rma/addsize.h
1968config.status: creating f77/pt2pt/Makefile
1969config.status: creating f77/info/Makefile
1970config.status: creating f77/spawn/Makefile
1971config.status: creating f77/spawn/type1aint.h
1972config.status: creating f77/rma/Makefile
1973config.status: creating f77/ext/Makefile
1974config.status: creating f77/ext/testlist
1975config.status: creating f77/io/Makefile
1976config.status: creating f77/io/iooffset.h
1977config.status: creating f77/io/iodisp.h
1978config.status: creating f77/io/ioaint.h
1979config.status: creating f90/Makefile
1980config.status: creating f90/attr/Makefile
1981config.status: creating f90/datatype/Makefile
1982config.status: creating f90/f90types/Makefile
1983config.status: creating f90/util/Makefile
1984config.status: creating f90/coll/Makefile
1985config.status: creating f90/comm/Makefile
1986config.status: creating f90/topo/Makefile
1987config.status: creating f90/init/Makefile
1988config.status: creating f90/pt2pt/Makefile
1989config.status: creating f90/rma/Makefile
1990config.status: creating f90/info/Makefile
1991config.status: creating f90/spawn/Makefile
1992config.status: creating f90/timer/Makefile
1993config.status: creating f90/ext/Makefile
1994config.status: creating f90/ext/testlist
1995config.status: creating f90/io/Makefile
1996config.status: creating f90/misc/Makefile
1997config.status: creating cxx/Makefile
1998config.status: creating cxx/util/Makefile
1999config.status: creating cxx/attr/Makefile
2000config.status: creating cxx/pt2pt/Makefile
2001config.status: creating cxx/comm/Makefile
2002config.status: creating cxx/coll/Makefile
2003config.status: creating cxx/info/Makefile
2004config.status: creating cxx/datatype/Makefile
2005config.status: creating cxx/io/Makefile
2006config.status: creating cxx/init/Makefile
2007config.status: creating cxx/rma/Makefile
2008config.status: creating cxx/spawn/Makefile
2009config.status: creating threads/Makefile
2010config.status: creating threads/pt2pt/Makefile
2011config.status: creating threads/util/Makefile
2012config.status: creating threads/comm/Makefile
2013config.status: creating threads/init/Makefile
2014config.status: creating threads/spawn/Makefile
2015config.status: creating errors/Makefile
2016config.status: creating errors/attr/Makefile
2017config.status: creating errors/basic/Makefile
2018config.status: creating errors/coll/Makefile
2019config.status: creating errors/comm/Makefile
2020config.status: creating errors/faults/Makefile
2021config.status: creating errors/group/Makefile
2022config.status: creating errors/pt2pt/Makefile
2023config.status: creating errors/rma/Makefile
2024config.status: creating errors/spawn/Makefile
2025config.status: creating errors/topo/Makefile
2026config.status: creating errors/io/Makefile
2027config.status: creating errors/cxx/Makefile
2028config.status: creating errors/cxx/errhan/Makefile
2029config.status: creating errors/cxx/io/Makefile
2030config.status: creating errors/f77/Makefile
2031config.status: creating errors/f90/Makefile
2032config.status: creating manual/Makefile
2033config.status: creating manual/manyconnect
2034config.status: creating perf/Makefile
2035config.status: creating testlist
2036config.status: creating cxx/testlist
2037config.status: creating f77/testlist
2038config.status: creating f90/testlist
2039config.status: creating threads/testlist
2040config.status: creating errors/testlist
2041config.status: creating errors/cxx/testlist
2042config.status: creating include/mpitestconf.h
2043config.status: executing default-1 commands
2044config.status: executing default-2 commands
2045config.status: executing default-3 commands
2046Configuration completed.