Ticket #694: c.txt

Configuring MPICH2 version 1.1 with  '--with-pm=mpd' '--prefix=/home/administrator/mpich2-install'
Running on system: Linux hydra1.met.fsu.edu 2.6.29.5-191.fc11.i686.PAE #1 SMP Tue Jun 16 23:19:53 EDT 2009 i686 i686 i386 GNU/Linux
Executing mpich2prereq in /home/administrator/libraries/mpich2-1.1/src/mpid/ch3 with 
Executing mpich2prereq in /home/administrator/libraries/mpich2-1.1/src/mpid/ch3/channels/nemesis
sourcing /home/administrator/libraries/mpich2-1.1/src/pm/mpd/mpich2prereq
sourcing /home/administrator/libraries/mpich2-1.1/src/pm/mpd/setup_pm
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute ((weak_import)) allowed... yes
checking for multiple weak symbol support... yes
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether Fortran 77 compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/i586-redhat-linux/4.4.0 -L/usr/lib/gcc/i586-redhat-linux/4.4.0/../../.. -lgfortranbegin -lgfortran -lm
checking whether gfortran accepts the FLIBS found by autoconf... yes
checking whether C can link with  -L/usr/lib/gcc/i586-redhat-linux/4.4.0 -L/usr/lib/gcc/i586-redhat-linux/4.4.0/../../.. -lgfortranbegin -lgfortran -lm... yes
checking for linker for Fortran main programs... Use Fortran to link programs
checking whether Fortran 77 and C objects are compatible... yes
checking for Fortran 77 name mangling... lower underscore
checking what libraries are needed to link Fortran programs with C routines that use stdio... none
checking for f90... no
checking for xlf90... no
checking for pgf90... no
checking for ifort... no
checking for epcf90... no
checking for f95... f95
checking that f works as the extension for Fortran 90 program... yes
checking whether we are using the GNU Fortran 90 compiler... yes
checking whether f95 accepts -g... yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (f95  ) works... yes
checking whether the Fortran 90 compiler (f95  ) is a cross-compiler... no
checking whether Fortran 90 works with Fortran 77... yes
checking whether Fortran accepts ! for comments... yes
checking for include directory flag for Fortran... -I
checking for Fortran 77 flag for library directories... -L
checking for which Fortran libraries are needed to link C with Fortran... none
checking whether Fortran compiler processes .F files with C preprocessor... yes
checking that f works as the extension for Fortran 90 program... yes
checking whether we are using the GNU Fortran 90 compiler... (cached) yes
checking whether f95 accepts -g... (cached) yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (f95  ) works... yes
checking whether the Fortran 90 compiler (f95  ) is a cross-compiler... no
checking for Fortran 90 module extension... mod
checking for Fortran 90 module include flag... -I
checking whether Fortran 90 accepts f90 suffix... yes
checking whether Fortran 90 compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes
checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none
checking for f90 compiler vendor... gnu
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking whether the C++ compiler c++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking for GNU g++ version... 4 . 4
checking whether C++ compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for perl... /usr/bin/perl
checking for ar... ar
checking for ranlib... ranlib
checking for etags... no
checking for killall... killall
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking whether install breaks libraries... no
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... no
checking for bash... /bin/bash
checking whether /bin/bash supports arrays... yes
checking for doctext... false
checking for location of doctext style files... unavailable
checking for an ANSI C-conforming const... yes
checking for volatile... yes
checking for restrict... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... yes
checking whether gcc supports __func__... yes
Using gcc to determine dependencies
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... four
checking for max C struct floating point alignment... four
checking for max C struct alignment of structs with doubles... four
checking for max C struct floating point alignment with long doubles... four
checking if alignment of structs with doubles is based on position... no
checking if alignment of structs with long long ints is based on position... no
checking if double alignment breaks rules, find actual alignment... no
checking for alignment restrictions on pointers... int or better
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 4
checking size of unsigned long... 4
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 12
checking size of wchar_t... 0
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for sizeof wchar_t... 4
checking size of void *... 4
checking for size of float int... 8
checking for size of double int... 12
checking for size of long int... 8
checking for size of short int... 6
checking for size of 2 int... 8
checking for size of long double int... 16
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking inttypes.h usability... yes
checking inttypes.h presence... yes
checking for inttypes.h... yes
checking stdint.h usability... yes
checking stdint.h presence... yes
checking for stdint.h... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for size of Fortran type integer... 4
checking for size of Fortran type real... 4
checking for size of Fortran type double precision... 8
checking whether integer*1 is supported... yes
checking whether integer*2 is supported... yes
checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... no
checking whether real*4 is supported... yes
checking whether real*8 is supported... yes
checking whether real*16 is supported... no
checking for C type matching Fortran integer... int
checking for size of MPI_Status... 20
checking for values of Fortran logicals... True is 1 and False is 0
checking for Fortran 90 integer kind for 4-byte integers... 4
checking for Fortran 90 integer kind for 8-byte integers... 8
checking whether real*8 is supported in Fortran 90... yes
checking size of bool... 1
checking how to run the C++ preprocessor... c++ -E
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 24
checking if char * pointers use byte addresses... yes
checking for alignment restrictions on ... no
checking for alignment restrictions on int32_t... no
checking size of MPIR_Bsend_data_t... 56
checking for gcc __asm__ and pentium cmpxchgl instruction... yes
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no
checking for gcc __asm__ and IA64 xchg4 instruction... no
checking for ANSI C header files... no
checking stdlib.h usability... yes
checking stdlib.h presence... yes
checking for stdlib.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking sys/types.h usability... yes
checking sys/types.h presence... yes
checking for sys/types.h... yes
checking string.h usability... yes
checking string.h presence... yes
checking for string.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stddef.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking unistd.h usability... yes
checking unistd.h presence... yes
checking for unistd.h... yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/uio.h... yes
checking for size_t... yes
checking for setitimer... yes
checking for alarm... yes
checking for vsnprintf... yes
checking for vsprintf... yes
checking whether vsnprintf needs a declaration... no
checking for strerror... yes
checking for strncasecmp... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for va_copy... yes
checking valgrind.h usability... no
checking valgrind.h presence... no
checking for valgrind.h... no
checking memcheck.h usability... no
checking memcheck.h presence... no
checking for memcheck.h... no
checking valgrind/valgrind.h usability... no
checking valgrind/valgrind.h presence... no
checking for valgrind/valgrind.h... no
checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking for working alloca.h... yes
checking for alloca... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for fdopen... yes
checking whether fdopen needs a declaration... yes
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for clock_gettime... no
checking for clock_getres... no
checking for gethrtime... no
checking for gettimeofday... yes
sourcing /home/administrator/libraries/mpich2-1.1/src/mpid/ch3/setup_device
RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
sourcing /home/administrator/libraries/mpich2-1.1/src/mpid/ch3/channels/nemesis/setup_channel
RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL
sourcing /home/administrator/libraries/mpich2-1.1/src/mpid/common/locks/setup
RUNNING SETUP FOR THE PROCESS LOCKS MODULE
SPARC V9 inline spin locks supported...no
SPARC V8 inline spin locks supported...no
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_yield... no
checking for library containing pthread_key_create... -lpthread
checking for pthread_cleanup_push... no
checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... no
checking for sched_yield... yes
checking for yield... no
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for getpid... yes
checking for sched_setaffinity... yes
checking for sched_getaffinity... yes
checking for bindprocessor... no
checking for thread_policy_set... no
checking whether cpu_set_t available... yes
checking whether the CPU_SET and CPU_ZERO macros are defined... no
configure: configuring subsystem in src/openpa
configure: WARNING: Unrecognized options: --with-pm
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for ranlib... ranlib
checking whether to enable assertions... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking intrin.h usability... no
checking intrin.h presence... no
checking for intrin.h... no
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for pthread_create in -lpthread... yes
checking if 100 threads can be run at once... yes
checking size of void *... 4
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking for support for gcc x86/x86_64 bit primitives... yes
checking for support for gcc ia64 primitives... no
checking for support for gcc PowerPC atomics... no
checking for support for gcc SiCortex atomics... no
checking for support for gcc atomic intrinsics... yes
checking for support for Windows NT atomic intrinsics... no
checking for support for Sun atomic operations library... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: src/opa_config.h is unchanged
config.status: executing depfiles commands
configure: WARNING: Unrecognized options: --with-pm
configure: configuring subsystem in src/mpid/ch3
RUNNING CONFIGURE FOR CH3 DEVICE
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
16
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for string.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking uuid/uuid.h usability... yes
checking uuid/uuid.h presence... yes
checking for uuid/uuid.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for unistd.h... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking net/if.h usability... yes
checking net/if.h presence... yes
checking for net/if.h... yes
checking for pid_t... yes
checking for inet_pton... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for CFUUIDCreate... no
checking for uuid_generate... no
checking for time... yes
checking for library containing uuid_generate... -luuid
checking whether CPP accepts variable length argument lists... yes
checking whether byte ordering is bigendian... no
checking whether we can use struct ifconf... yes
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of void *... 4
checking for etags... true
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/shm/Makefile
config.status: creating util/shmbase/Makefile
config.status: creating channels/Makefile
config.status: creating localdefs
config.status: creating include/mpid_thread.h
config.status: creating include/mpidi_ch3_conf.h
config.status: include/mpidi_ch3_conf.h is unchanged
config.status: executing default-1 commands
copying /home/administrator/libraries/mpich2-1.1/src/mpid/ch3/../common/thread/mpid_thread_mpe.c to src/mpid_thread.c
=== configuring in channels/nemesis (/tmp/administrator/mpich2/src/mpid/ch3/channels/nemesis)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/src/mpid/ch3/channels/nemesis/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'CC=gcc' 'CFLAGS= -O2' 'LIBS=-lpthread ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/src/mpid/ch3/channels/nemesis
RUNNING CONFIGURE FOR THE NEMESIS CHANNEL
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for pid_t... yes
checking for net/if.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for unistd.h... (cached) yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking for sys/types.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/ipc.h usability... yes
checking sys/ipc.h presence... yes
checking for sys/ipc.h... yes
checking sys/shm.h usability... yes
checking sys/shm.h presence... yes
checking for sys/shm.h... yes
checking for netinet/in.h... yes
checking for mkstemp... yes
checking for rand... yes
checking for srand... yes
checking for OpenPA atomic primitive availability... yes
checking for mmap... yes
checking for munmap... yes
configure: Using a memory-mapped file for shared memory
checking whether struct hostent contains h_addr_list... yes
checking whether we can use struct ifconf... yes
checking knem_io.h usability... no
checking knem_io.h presence... no
checking for knem_io.h... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating nemesis/Makefile
config.status: creating nemesis/src/Makefile
config.status: creating nemesis/utils/Makefile
config.status: creating nemesis/utils/replacements/Makefile
config.status: creating nemesis/utils/monitor/Makefile
config.status: creating nemesis/netmod/Makefile
config.status: creating nemesis/netmod/elan/Makefile
config.status: creating nemesis/netmod/gm/Makefile
config.status: creating nemesis/netmod/mx/Makefile
config.status: creating nemesis/netmod/tcp/Makefile
config.status: creating nemesis/netmod/ib/Makefile
config.status: creating nemesis/netmod/psm/Makefile
config.status: creating nemesis/netmod/newmad/Makefile
config.status: creating nemesis/netmod/none/Makefile
config.status: creating localdefs
config.status: creating nemesis/include/mpid_nem_net_module_defs.h
config.status: creating nemesis/src/mpid_nem_net_array.c
config.status: creating include/mpidi_ch3i_nemesis_conf.h
config.status: include/mpidi_ch3i_nemesis_conf.h is unchanged
configure: configuring subsystem in src/mpid/common/locks
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
RUNNING CONFIGURE FOR LOCKS
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for ar... ar
checking for ranlib... ranlib
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for yield... no
checking for sched_yield... yes
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for mutex_init... no
checking for compare_and_swap... no
checking for pthread_mutexattr_init... yes
checking for pthread_mutexattr_setpshared... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for inline... inline
checking for working volatile... yes
checking for an ANSI C-conforming const... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mpid_locksconf.h
config.status: mpid_locksconf.h is unchanged
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
configure: configuring subsystem in src/mpid/common/locks
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
RUNNING CONFIGURE FOR LOCKS
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for ar... ar
checking for ranlib... ranlib
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for yield... no
checking for sched_yield... yes
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for mutex_init... no
checking for compare_and_swap... no
checking for pthread_mutexattr_init... yes
checking for pthread_mutexattr_setpshared... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for inline... inline
checking for working volatile... yes
checking for an ANSI C-conforming const... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mpid_locksconf.h
config.status: mpid_locksconf.h is unchanged
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
configure: configuring subsystem in src/mpi/romio
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
Configuring with args --prefix=/home/administrator/mpich2-install --with-pm=mpd --with-atomic-primitives=auto_allow_emulation
checking for architecture... LINUX
ROMIO home directory is /home/administrator/libraries/mpich2-1.1/src/mpi/romio
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking how to run the C preprocessor... gcc -E
checking for memalign... yes
checking Fortran external names
Fortran externals have a trailing underscore and are lowercase
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of int... 4
checking size of void *... 4
checking for int large enough for pointers... yes
checking size of long long... 8
checking for extension for Fortran 90 programs... f90
checking for Fortran 90 KIND parameter for 8-byte integers...            8
checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes
Overriding Array test for MPICH2
checking for weak symbol support... pragma weak
checking that weak symbols are visible to other files... yes
checking that the compiler correctly implements weak symbols... yes
checking whether struct flock compatible with MPI_Offset... yes
checking for pvfs2-config... notfound
checking configured file systems... testfs ufs nfs
configure: WARNING: File locks may not work with NFS.  See the Installation and
users manual for instructions on testing and if necessary fixing this
checking for library containing aio_write... -lrt
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking if aio.h exists and can be compiled... yes
checking if sys/aio.h exists and can be compiled... no
checking whether aio routines can be used... yes
checking for obsolete two-argument aio_write... no
checking for obsolete two-argument aio_suspend... no
checking for aio_fildes member of aiocb structure... yes
checking for aio_whence member of aiocb structure... no
checking for aio_handle member of aiocb structure... no
checking for aio_reqprio member of aiocb structure... yes
checking for aio_sigevent member of aiocb structure... yes
checking sys/vfs.h usability... yes
checking sys/vfs.h presence... yes
checking for sys/vfs.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking sys/statvfs.h usability... yes
checking sys/statvfs.h presence... yes
checking for sys/statvfs.h... yes
checking whether struct statfs properly defined... yes
checking for f_fstypename member of statfs structure... no
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stat... yes
checking for st_fstype member of stat structure... no
checking for sys/types.h... (cached) yes
checking for sys/statvfs.h... (cached) yes
checking for sys/vfs.h... (cached) yes
checking for statvfs... yes
checking for f_basetype member of statvfs structure... no
checking for unistd.h... (cached) yes
checking for large file defines... yes
checking whether off64_t is an scalar type... yes
checking for strerror... yes
checking for doctext... false
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for lstat... yes
checking whether lstat needs a declaration... yes
checking for readlink... yes
checking whether readlink needs a declaration... no
checking for fsync... yes
checking whether fsync needs a declaration... no
checking for ftruncate... yes
checking whether ftruncate needs a declaration... no
checking for unistd.h... (cached) yes
checking for large file defines... yes
setting SYSDEP_INC to 
checking for restrict... __restrict
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
setting CC to gcc
setting F77 to gfortran
setting TEST_CC to /tmp/administrator/mpich2/bin/mpicc
setting TEST_F77 to /tmp/administrator/mpich2/bin/mpif77
setting CFLAGS to  -O2  -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
setting USER_CFLAGS to 
setting USER_FFLAGS to 
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi-io/Makefile
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating adio/common/Makefile
config.status: creating test/Makefile
config.status: creating test/misc.c
config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating adio/ad_nfs/Makefile
config.status: creating adio/ad_ufs/Makefile
config.status: creating adio/ad_bgl/Makefile
config.status: creating adio/ad_bglockless/Makefile
config.status: creating adio/ad_panfs/Makefile
config.status: creating adio/ad_xfs/Makefile
config.status: creating adio/ad_sfs/Makefile
config.status: creating adio/ad_pfs/Makefile
config.status: creating adio/ad_testfs/Makefile
config.status: creating adio/ad_pvfs/Makefile
config.status: creating adio/ad_pvfs2/Makefile
config.status: creating adio/ad_gridftp/Makefile
config.status: creating adio/ad_lustre/Makefile
config.status: creating adio/ad_zoidfs/Makefile
config.status: creating mpi-io/fortran/Makefile
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating mpi-io/glue/mpich2/Makefile
config.status: creating mpi-io/glue/mpich1/Makefile
config.status: creating mpi-io/glue/default/Makefile
config.status: creating common/dataloop/Makefile
config.status: creating adio/include/romioconf.h
config.status: executing default-1 commands
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
configure: configuring subsystem in src/pmi/simple
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
RUNNING CONFIGURE FOR THE SIMPLE PMI
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for string.h... (cached) yes
checking for stdlib.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for strings.h... (cached) yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for strncasecmp... yes
checking for sys/types.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/socket.h... (cached) yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for library containing socket... none required
checking for library containing gethostbyname... none required
checking for socket... yes
checking for setsockopt... yes
checking for gethostbyname... yes
checking whether socklen_t is defined (in sys/socket.h if present)... yes
checking whether struct hostent contains h_addr_list... yes
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating pmiconf.h
config.status: pmiconf.h is unchanged
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
configure: configuring subsystem in src/pm/mpd
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
Configuring with args --prefix=/home/administrator/mpich2-install --with-pm=mpd --with-atomic-primitives=auto_allow_emulation
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether make sets $(MAKE)... yes
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install /usr/bin/install -c works... yes
Using INSTALL=/usr/bin/install -c
checking for totalview... no
checking for python2.5... no
checking for python2.4... no
checking for python2.3... no
checking for python2.2... no
checking for python2... python2
checking for python... python
checking that python2 is a valid python version... yes
checking that the cPickle module is available for python2... yes
checking for library containing socket... none required
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for strings.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for putenv... yes
checking for socket... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mpdconf.h
configure: WARNING: Unrecognized options: --with-pm, --with-atomic-primitives
configure: configuring subsystem in src/mpe2
Configuring MPE Profiling System with  '--prefix=/home/administrator/mpich2-install' '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
This MPE build is part of the MPICH2 build
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether MPI_CC has been set ... /tmp/administrator/mpich2/bin/mpicc 
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether MPI_F77 has been set ... /tmp/administrator/mpich2/bin/mpif77 
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/i586-redhat-linux/4.4.0 -L/usr/lib/gcc/i586-redhat-linux/4.4.0/../../.. -lpthread -lrt -lgfortranbegin -lgfortran -lm
checking whether gfortran accepts the FLIBS found by autoconf... yes
checking whether C can link with  -L/usr/lib/gcc/i586-redhat-linux/4.4.0 -L/usr/lib/gcc/i586-redhat-linux/4.4.0/../../.. -lpthread -lrt -lgfortranbegin -lgfortran -lm... yes
checking for linker for Fortran main programs... Use Fortran to link programs
checking whether Fortran 77 and C objects are compatible... yes
checking for Fortran 77 name mangling... lower underscore
checking what libraries are needed to link Fortran programs with C routines that use stdio... none
checking for Fortran 77 flag for library directories... -L
checking for include directory flag for Fortran... -I
checking how to run the C preprocessor... gcc -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for ranlib... ranlib
checking whether install breaks libraries... no
checking for leftover Makefiles in subpackages ... none 
configure: creating ./config.status
config.status: creating Makefile
config.status: creating sbin/mpetestlink
config.status: creating sbin/mpetestexec
config.status: creating sbin/mpetestexeclog
config.status: creating sbin/mpeinstall
config.status: creating sbin/mpecheckinstall
config.status: WARNING:  '/home/administrator/libraries/mpich2-1.1/src/mpe2/sbin/mpecheckinstall.in' seems to ignore the --datarootdir setting
config.status: creating sbin/mpecheckbuild
config.status: creating etc/mpe_help.conf
config.status: creating etc/mpe_f77env.conf
config.status: creating mpe_conf.h
config.status: executing default-1 commands
=== configuring in src/misc (/tmp/administrator/mpich2/src/mpe2/src/misc)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/src/mpe2/src/misc/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/misc
Configuring MPE Miscellaneous Library with  '--disable-option-checking' '--prefix=/home/administrator/mpich2-install' '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/misc'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for dbx... no
checking for gdb... /usr/bin/gdb
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sysinfo... yes
checking for uname... yes
checking for gethostbyname... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking sys/systeminfo.h usability... no
checking sys/systeminfo.h presence... no
checking for sys/systeminfo.h... no
checking for sys/types.h... (cached) yes
checking for sighandler_t... no
checking for kill... yes
checking whether kill needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/dbxerr.c
config.status: creating mpe_misc_conf.h
=== configuring in src/callstack (/tmp/administrator/mpich2/src/mpe2/src/callstack)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/src/mpe2/src/callstack/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/callstack
Configuring MPE CallStack Library with  '--disable-option-checking' '--prefix=/home/administrator/mpich2-install' '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/callstack'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking execinfo.h usability... yes
checking execinfo.h presence... yes
checking for execinfo.h... yes
checking whether <execinfo.h> defines backtrace_symbols_fd() ... yes
checking if <execinfo.h> links with -Wl,--export-dynamic ... yes
checking for fdopen... yes
checking whether fdopen needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/mpe_callstack.h
config.status: creating etc/mpe_callstack_ldflags.conf
config.status: creating mpe_callstack_conf.h
=== configuring in src/logging (/tmp/administrator/mpich2/src/mpe2/src/logging)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/src/mpe2/src/logging/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/logging
Configuring MPE Logging Library and Tools with  '--disable-option-checking' '--prefix=/home/administrator/mpich2-install' '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/logging'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for sys/types.h... (cached) yes
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking for sys/stat.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for header that defines C99 integer types, intXX_t ... <stdint.h> 
checking for inttypes.h... (cached) yes
checking whether <inttypes.h> defines the PRIdXX macros ... yes
checking if <stdint.h> can be behind system headers ... yes
checking size of void *... 4
checking for address-sized integer ... CLOG_int32_t
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for srand48... yes
checking whether srand48 needs a declaration... no
checking for lrand48... yes
checking whether lrand48 needs a declaration... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for O_LARGEFILE for open() ... needs _LARGEFILE64_SOURCE 
checking for O_BINARY for open() ... no
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_mutex_lock in -lpthread... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/clog_inttypes.h
config.status: creating include/mpi_null.h
config.status: creating include/mpe_log_thread.h
config.status: creating etc/mpe_log.conf
config.status: creating etc/mpe_nolog.conf
config.status: creating etc/mpe_log_postlib.conf
config.status: creating mpe_logging_conf.h
=== configuring in src/wrappers (/tmp/administrator/mpich2/src/mpe2/src/wrappers)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/src/mpe2/src/wrappers/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/wrappers
Configuring MPE Wrapper Libraries For MPI with  '--disable-option-checking' '--prefix=/home/administrator/mpich2-install' '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/wrappers'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for stdarg is correct... yes
checking if compiler accepts prototypes ... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for safe PMPI invocations ... no
checking for the value of MPI_STATUS_SIZE ... 5
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_f77env.conf
config.status: creating etc/mpe_mpilog.conf
config.status: creating etc/mpe_mpitrace.conf
config.status: creating mpe_wrappers_conf.h
=== configuring in src/graphics (/tmp/administrator/mpich2/src/mpe2/src/graphics)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/src/mpe2/src/graphics/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/graphics
Configuring MPE X Graphics Library with  '--disable-option-checking' '--prefix=/home/administrator/mpich2-install' '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/graphics'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for X... libraries , headers 
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of void *... 4
checking for long pointer... no
checking for system... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating contrib/life/Makefile
config.status: creating contrib/mandel/Makefile
config.status: creating contrib/mastermind/Makefile
config.status: creating contrib/test/Makefile
config.status: creating etc/mpe_mpianim.conf
config.status: creating etc/mpe_graphics.conf
config.status: creating mpe_graphics_conf.h
=== configuring in src/collchk (/tmp/administrator/mpich2/src/mpe2/src/collchk)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/src/mpe2/src/collchk/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/collchk
Configuring MPE Collective and Datatype Checking Library with  '--disable-option-checking' '--prefix=/home/administrator/mpich2-install' '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/collchk'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for working alloca.h... yes
checking for alloca... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_mpicheck.conf
config.status: creating mpe_collchk_conf.h
=== configuring in src/slog2sdk (/tmp/administrator/mpich2/src/mpe2/src/slog2sdk)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/src/mpe2/src/slog2sdk/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/slog2sdk
Configuring SLOG2SDK with  '--disable-option-checking' '--prefix=/home/administrator/mpich2-install' '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/slog2sdk'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking if CLASSPATH is set... no, good to go
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for java in user's PATH... found /usr/bin/java
checking if /usr/bin/java runs simple java class... yes
checking if /usr/bin/java runs simple jar file... yes
checking if /usr/bin/java runs non-GUI tool... yes
checking if /usr/bin/java runs simple Swing class... yes
checking if /usr/bin/java runs simple Swing jar file... yes
checking for Java version... java full version "1.6.0_0-b16", i.e. Java 2 SDK
checking for cygpath... no
creating /tmp/administrator/mpich2/src/mpe2/src/slog2sdk/lib from source
creating directory /tmp/administrator/mpich2/src/mpe2/src/slog2sdk/bin
creating /tmp/administrator/mpich2/src/mpe2/src/slog2sdk/doc from source
creating /tmp/administrator/mpich2/src/mpe2/src/slog2sdk/share
creating /tmp/administrator/mpich2/src/mpe2/src/slog2sdk/share/logfiles
creating sample logfiles from source
checking for leftover Makefiles in subpackages ... none 
configure: creating ./config.status
config.status: creating Makefile
config.status: creating sbin/install-package
config.status: creating bin/slog2print
config.status: creating bin/slog2navigator
config.status: creating bin/slog2filter
config.status: creating bin/slog2updater
config.status: creating bin/logconvertor
config.status: creating bin/jumpshot
config.status: creating bin/clogprint
config.status: creating bin/clogTOslog2
config.status: creating bin/clog2print
config.status: creating bin/clog2TOslog2
=== configuring in trace_rlog (/tmp/administrator/mpich2/src/mpe2/src/slog2sdk/trace_rlog)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/src/mpe2/src/slog2sdk/trace_rlog/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/slog2sdk/trace_rlog
Configuring TRACE_RLOG implementation with  '--disable-option-checking' '--prefix=/home/administrator/mpich2-install' '--with-pm=mpd' '--with-atomic-primitives=auto_allow_emulation' 'MPI_CC=/tmp/administrator/mpich2/bin/mpicc' 'MPI_F77=/tmp/administrator/mpich2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lpthread  -lpthread    -lrt   ' 'CPPFLAGS= -I/home/administrator/libraries/mpich2-1.1/src/openpa/src -I/tmp/administrator/mpich2/src/openpa/src -DUSE_PROCESS_LOCKS' 'F77=gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/administrator/libraries/mpich2-1.1/src/mpe2/src/slog2sdk/trace_rlog'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for string.h... (cached) yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for an ANSI C-conforming const... yes
checking size of void *... 4
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of __int64... 0
checking whether byte ordering is bigendian... no
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for sed... sed
checking for a sed that does not truncate output... sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for malloc in -lefence... no
checking for strstr... yes
checking target system type... i686-pc-linux-gnu
checking for javah in user's PATH... not found
checking for javah in user's PATH... not found
configure: WARNING:  Invalid JNI include dir, exit! 
configure: WARNING: SLOG2SDK: No sub-package has been configured
MPE2:  "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/graphics" "src/collchk" "src/slog2sdk" have been configured
checking the sizeof MPI_Offset... 8
checking whether the Fortran Offset type works with Fortran77... yes
checking whether the Fortran Offset type works with Fortran90... yes
Running Configure for F90 Type routines
configure: WARNING: Unrecognized options: --with-pm
checking for cc... gcc
checking whether the C compiler sets its return status correctly... yes
checking for an ANSI C-conforming const... no
checking that f works as the extension for Fortran 90 program... yes
checking for Fortran 90 compiler default output file name... a.out
checking whether the Fortran 90 compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU Fortran 90 compiler... yes
checking whether f95 accepts -g... yes
checking whether Fortran 90 accepts f90 suffix... yes
checking for precision and range of reals...  6 , 37
checking for precision and range of double precision...  15 , 307
checking for range of integers...  9
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for linker for Fortran main programs... Use Fortran to link programs
checking for Fortran 77 name mangling... lower underscore
checking for available integer kinds and ranges...  2 , 1, 4 , 2, 9 , 4, 18 , 8,
 {  2 , 1 , 1 }, {  4 , 2 , 2 }, {  9 , 4 , 4 }, {  18 , 8 , 8 },
configure: creating ./config.status
config.status: creating mpif90model.h
configure: WARNING: Unrecognized options: --with-pm
configure: creating ./config.status
config.status: creating Makefile
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config.status: creating mpich2-doxygen
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config.status: creating src/packaging/pkgconfig/mpich2-ch3.pc
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config.status: creating src/packaging/envmods/mpich2.module
config.status: WARNING:  '/home/administrator/libraries/mpich2-1.1/src/packaging/envmods/mpich2.module.in' seems to ignore the --datarootdir setting
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config.status: creating src/include/mpichconf.h
config.status: executing default-1 commands
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copying /home/administrator/libraries/mpich2-1.1/src/util/thread/mpe_thread_posix.c to src/util/thread/mpe_thread.c
moving mpe_thread.h to src/include
config.status: executing default-5 commands
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Updating dependency directories .deps
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=== configuring in test/mpi (/tmp/administrator/mpich2/test/mpi)
configure: running /bin/sh /home/administrator/libraries/mpich2-1.1/test/mpi/configure --disable-option-checking '--prefix=/home/administrator/mpich2-install'  '--with-pm=mpd' --cache-file=/dev/null --srcdir=/home/administrator/libraries/mpich2-1.1/test/mpi
RUNNING CONFIGURE FOR MPI TESTS
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking that f works as the extension for Fortran 90 program... yes
checking whether we are using the GNU Fortran 90 compiler... yes
checking whether f95 accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for an ANSI C-conforming const... yes
checking for restrict... __restrict
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for string.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for memory.h... (cached) yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_create... no
checking for pthread_yield... no
checking for pthread_barrier_init... no
checking for pthread_barrier_wait... no
Configuring tests for MPICH2
checking whether struct hostent contains h_addr_list... no
checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... no
checking for Fortran 77 name mangling... lower underscore
checking for Fortran libraries needed for getarg... none needed
checking whether Fortran has pointer declaration... no
checking that f works as the extension for Fortran 90 program... yes
checking whether we are using the GNU Fortran 90 compiler... (cached) yes
checking whether f95 accepts -g... (cached) yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (f95   ) works... yes
checking whether the Fortran 90 compiler (f95   ) is a cross-compiler... no
checking whether Fortran 90 has Cray-style pointer declaration... no
checking whether <iostream> available... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler implements the namespace std... yes
checking whether MPI_2DOUBLE_COMPLEX is available... no
checking size of void *... 0
checking size of int... 0
checking size of long... 0
checking size of long long... 0
checking size of short... 0
checking for C integer type of address size... int
checking for perl... /usr/bin/perl
checking for etags... true
configure: creating ./config.status
config.status: creating maint/testmerge
config.status: creating runtests
config.status: creating Makefile
config.status: creating basic/Makefile
config.status: creating attr/Makefile
config.status: creating util/Makefile
config.status: creating coll/Makefile
config.status: creating comm/Makefile
config.status: creating datatype/Makefile
config.status: creating errhan/Makefile
config.status: creating group/Makefile
config.status: creating info/Makefile
config.status: creating init/Makefile
config.status: creating pt2pt/Makefile
config.status: creating rma/Makefile
config.status: creating spawn/Makefile
config.status: creating topo/Makefile
config.status: creating io/Makefile
config.status: creating f77/Makefile
config.status: creating f77/attr/Makefile
config.status: creating f77/attr/attraints.h
config.status: creating f77/pt2pt/attr1aints.h
config.status: creating f77/ext/add1size.h
config.status: creating f77/datatype/Makefile
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config.status: creating f77/util/Makefile
config.status: creating f77/coll/Makefile
config.status: creating f77/comm/Makefile
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config.status: creating f77/init/Makefile
config.status: creating f77/rma/addsize.h
config.status: creating f77/pt2pt/Makefile
config.status: creating f77/info/Makefile
config.status: creating f77/spawn/Makefile
config.status: creating f77/spawn/type1aint.h
config.status: creating f77/rma/Makefile
config.status: creating f77/ext/Makefile
config.status: creating f77/ext/testlist
config.status: creating f77/io/Makefile
config.status: creating f77/io/iooffset.h
config.status: creating f77/io/iodisp.h
config.status: creating f77/io/ioaint.h
config.status: creating f90/Makefile
config.status: creating f90/attr/Makefile
config.status: creating f90/datatype/Makefile
config.status: creating f90/f90types/Makefile
config.status: creating f90/util/Makefile
config.status: creating f90/coll/Makefile
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config.status: creating f90/topo/Makefile
config.status: creating f90/init/Makefile
config.status: creating f90/pt2pt/Makefile
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config.status: creating f90/spawn/Makefile
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config.status: creating f90/ext/Makefile
config.status: creating f90/ext/testlist
config.status: creating f90/io/Makefile
config.status: creating f90/misc/Makefile
config.status: creating cxx/Makefile
config.status: creating cxx/util/Makefile
config.status: creating cxx/attr/Makefile
config.status: creating cxx/pt2pt/Makefile
config.status: creating cxx/comm/Makefile
config.status: creating cxx/coll/Makefile
config.status: creating cxx/info/Makefile
config.status: creating cxx/datatype/Makefile
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config.status: creating cxx/init/Makefile
config.status: creating cxx/rma/Makefile
config.status: creating cxx/spawn/Makefile
config.status: creating threads/Makefile
config.status: creating threads/pt2pt/Makefile
config.status: creating threads/util/Makefile
config.status: creating threads/comm/Makefile
config.status: creating threads/init/Makefile
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config.status: creating errors/Makefile
config.status: creating errors/attr/Makefile
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config.status: creating errors/coll/Makefile
config.status: creating errors/comm/Makefile
config.status: creating errors/faults/Makefile
config.status: creating errors/group/Makefile
config.status: creating errors/pt2pt/Makefile
config.status: creating errors/rma/Makefile
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config.status: creating errors/cxx/Makefile
config.status: creating errors/cxx/errhan/Makefile
config.status: creating errors/cxx/io/Makefile
config.status: creating errors/f77/Makefile
config.status: creating errors/f90/Makefile
config.status: creating manual/Makefile
config.status: creating manual/manyconnect
config.status: creating perf/Makefile
config.status: creating testlist
config.status: creating cxx/testlist
config.status: creating f77/testlist
config.status: creating f90/testlist
config.status: creating threads/testlist
config.status: creating errors/testlist
config.status: creating errors/cxx/testlist
config.status: creating include/mpitestconf.h
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
Configuration completed.